Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0093 ATGAATCAAACGGGTTTTCGTCTTTTGATTCTCTGTTTCACATTCTTCAGATTTTCCTGCAAGGCACAGAGTTCAGCTGATGAATCTTCACAAGATGCTGTCTCAAATTTCCAACCAAGCCTTGTTGTCGTCATAGCAATTCTCAGCTTCATGTTTTCACTAACTCTCATTCTTCTCATGTATGCCAAGATCTGTAGCAGAGGAGCTTCAGTTCATGGGGACCCAGAAAGTCAACCTAGGCTTCTCAGAACAAGGTCAAGATTTTCGGGTATCGACAAGGCTGTCATACAATCACTTCCCTTCTTCAGATTCTCTTCCCTCAGAGGATCAAAAGAAGGGCTTGAATGTGCAGTGTGCTTATCCAAGTTTGAAGACATTGAAATCCTCAGGCTACTTCCTAAGTGCAAACATGCTTTTCACATTAATTGCATCGATCATTGGCTTGAAAAGCATTCAAGTTGTCCCCTTTGTAGGCACAAGGTCAATCCTGAAGACCACACCATTTTTGCATATTCAAACAGCTTGAGGGTTCTTATTAATGGTGGGTCAGAATTCGGAGAGGAATCCAACATAGAGATTTCTGTTCAGAGAGCGGAAGAAGAAGAAGAAAGAAATGGGTCATCAAGATTCAGTATTGGAAGCAGTTTTAGGAGAATTGTAAAGGGTAATATTACTATAAAAGAAGAAGAATTGCCTATACAGAAAGAAACTGATGATCATGATCGTCACAACAAGGTCTATCATAAGCACAAACACAAGATTGTTATATCAAATTTTGTCCTCAAGAATCGATGGAGCAACGTGAGCTCTTCAGACCTCATGTTCTTGAACTCAGAGATGCTTGGGTGTATGTCAAGTTTAAGATTTAACAATTTGGAATCAGAGGGTGATCGGATTCTGGATGCGACAGAAGTAGAAGATGAACATGTTATGAACATAAAGGAGGAGATGGAGAGGAAGGTTTCATTTGAGAACAAAGTGGGCGGAATATGGAACAACATTAATAACTCTGTTTCAGAAAGTTCTAGTCATACATCGAAGTCTGTGAATCCTGTTGAGAAAAGATCGGTGTCGGATATCACTTCTGTCTCTAGATTTAGAGATTTGGGTATGAAAAATGAAACTTTTAGAGGTTCTGATTTGGTTCGCAACAATGTTAAAGAGGAAAAAATGAGGCAGATTTGGCTGCCAGTTGCTAAGAAAACAGTTCAATGGTTTCTGAGCAGAGAAAGAAGGTTTCAGCAATCTCAGATTGTATAA 1260 0.3944 MNQTGFRLLILCFTFFRFSCKAQSSADESSQDAVSNFQPSLVVVIAILSFMFSLTLILLMYAKICSRGASVHGDPESQPRLLRTRSRFSGIDKAVIQSLPFFRFSSLRGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHSSCPLCRHKVNPEDHTIFAYSNSLRVLINGGSEFGEESNIEISVQRAEEEEERNGSSRFSIGSSFRRIVKGNITIKEEELPIQKETDDHDRHNKVYHKHKHKIVISNFVLKNRWSNVSSSDLMFLNSEMLGCMSSLRFNNLESEGDRILDATEVEDEHVMNIKEEMERKVSFENKVGGIWNNINNSVSESSSHTSKSVNPVEKRSVSDITSVSRFRDLGMKNETFRGSDLVRNNVKEEKMRQIWLPVAKKTVQWFLSRERRFQQSQIV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0093 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 411 - -
Bisa01g0093 419 SMART ring_2 116 157 IPR001841 -
Bisa01g0093 419 Pfam Ring finger domain 115 158 IPR001841 -
Bisa01g0093 419 SUPERFAMILY RING/U-box 95 164 - -
Bisa01g0093 419 CDD RING-H2_EL5-like 115 158 - -
Bisa01g0093 419 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Bisa01g0093 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Bisa01g0093 419 FunFam RING-H2 finger protein ATL43 91 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0093 Bisa-ChrBisa01 1392738 1393997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0093 1 414 C3H Transcription Factor Family AT4G28890 44.318 6.46e-102 308