Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0042 ATGCCGGAGTTTCTGAAAACATCCAATAATCGCCAACGCAATCCCTTCACTATGATGCTCGGGGAACCCCATACTACAAATCCGACGGTCCACGTTCCTCCCTGGCCCCTCCAGCTCGATGATTCTACGCCCGAGATGTATTCCCCTTACCCCGTCAGTGGCGTCTCCCTCAACTCCGACAGCAATTCCAGCACTGGCGATTACTCTCCTTATTATCTGCAAGACGCACTCACCGCGCTGCACCGTTATCTCCCGTCCAACGAAGCCGATATCGACTCCGACTCCGAGCTTCTGGGTCGGGAGTCCGATGCTCCTGTGGATGCATACTCTTGCGATCATTTCCGCATGTACGAGTTCAAGGTCCGGAGGTGCGCGCGTGGCAGGTCCCATGACTGGACCGAATGTCCTTATGCTCATCCCGGCGAGAAGGCTCGCAGGAGGGACCCGAGGAAGTTTCACTATTCCGGCACTGCATGCCCCGACTTTCGCAAAGGCAACTGCAAGAAGGGGGATGCGTGTGAGTTCGCTCATGGTGTGTTTGAGTGTTGGCTTCACCCGGCTCGTTATCGTACGCAGCCGTGTAAGGACGGGACCAGCTGCCGGAGAAGGGTGTGCTTCTTTGCACACACGCCGGAGCAACTCAGGGTTCTGCCTCAGCAGAGTCCCAGGAGCGCTAACACGGCCGACTCATATGATGGCTCTCCTTTAAGGCAGGCGATCGAGTCTTGTGCCAAAACACTGCCGTTCGTGTCCTCTCCGGGGTCGATTTCCCCACCTGGTACGCCTCCGACGGAGTCTCCTCCGTTGTCCCCGATGGCACAGTCACTGAGCCGGTCTCTGGGGTCGAGCTCCATCAACGAGATGGTGACTTCTCTGCGTAATTTGCAGCTTGGTAAGGGGAAGCCGTTGTGCTCCTCTTGGAATGTTGCTATGGGGTCTCCCTGTTTCGGATCTCCGAGGGGATCCATGCTCCGACCCGGATTTAGTAGCCTTCCTGCTACCCCTACCCAGGCGCCGACTCGTGCAGGAGCGAACTATTTCGATATTTGGGATCAAAGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCAGGAAGGGACATCAGGGCGAAGATGTTTGAGAAATTGAGCAAAGAGAATTCTCTCGAACGATCGGGGCCGAGTGCATCCGGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTGGTGAAATGA 1218 0.5665 MPEFLKTSNNRQRNPFTMMLGEPHTTNPTVHVPPWPLQLDDSTPEMYSPYPVSGVSLNSDSNSSTGDYSPYYLQDALTALHRYLPSNEADIDSDSELLGRESDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANTADSYDGSPLRQAIESCAKTLPFVSSPGSISPPGTPPTESPPLSPMAQSLSRSLGSSSINEMVTSLRNLQLGKGKPLCSSWNVAMGSPCFGSPRGSMLRPGFSSLPATPTQAPTRAGANYFDIWDQSCEEEPVMERVESGRDIRAKMFEKLSKENSLERSGPSASGGAPDVGWVSELVK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0042 405 ProSiteProfiles Zinc finger C3H1-type profile. 154 180 IPR000571 GO:0046872
Bisa01g0042 405 SMART c3hfinal6 153 179 IPR000571 GO:0046872
Bisa01g0042 405 SMART c3hfinal6 188 211 IPR000571 GO:0046872
Bisa01g0042 405 PANTHER UNKEMPT FAMILY MEMBER 28 405 IPR045234 -
Bisa01g0042 405 FunFam Zinc finger CCCH domain-containing protein 66 111 179 - -
Bisa01g0042 405 Gene3D - 154 217 - -
Bisa01g0042 405 MobiDBLite consensus disorder prediction 379 405 - -
Bisa01g0042 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 178 IPR000571 GO:0046872
Bisa01g0042 405 MobiDBLite consensus disorder prediction 251 281 - -
Bisa01g0042 405 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0042 Bisa-ChrBisa01 701442 702659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0042 103 217 C2H2 Transcription Factor Family AT5G12850 69.565 2.33e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa01g0042 zf-CCCH 4.1e-06 CL0537