Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g0013 ATGCTGCGTAGTTCGTTGGTGACCCAGTTTTTGCCTTCGAGCTTATCCCTGAACCCTCTCCTTGATCAAAGCTTTGAGCGATGTTCAGAATATTGTAAGAAGCCAATGGGAGTTCAAAGAAAAACGCATTCTCAGCTTCAGGCTCTTGATAATTTTTATACAGAGGAGAGGTATCCAACACCGAGAGCAATTAAAGACTATGCTGCTGCTTTGGGGTTGACATACAAGCAAGTTCGAGATTGGTTTGTTGAGAAAAGGAAGAGGGAGAAGAGAGAAAATGGAGTATTAGTGCCATCATGTTCTTTAGTGTCTAATCAGAAAGCCAATGCTTCTTCACCATCAAGATATGATATAACTGTAACAAGGAATGCTAGGAAAAAGAAAAGGCATAAATGTCTTCAGGAGTTATTTCCAGCAGACTACATTCTACATAAGGTTTTCCGAAAAGATGGTCCTCATCTTGGTGAGGAATTTGATTCTCTTCCTACAGGTGCATTCCTCCACCATAGTGGTTTTGTAGTGAATGGATATCCTACCAATTTTAAGAAAGGTCTCAAAAATACTACTGCTAGTCTAGAGGACCAAGGACCAATGAAAAGGAGGAAGGTTTTAAAGAGTGCAATTGGAAGTCACCCTGATTCTAATGAGAAGACACCTATAAGAAAACATGGTATTGGCAAAGGTTTGATGACAGTATGGAGGGCGACAAACCCTAATGCTGGTGATGTTCCTATTGGCTTTGTGAGAACAAGAAGTGAGAACAAGAAGAAACCAGAGTGTGAAAACAAGAAGCCACGGGAAACACTAATCATGACTGCAAAATCTAACCAAGATGTTATTCAGAAGCAATCACAGAAAGAAAAATGTGAACTTGTTTTAGATAGAGCAATGCCTGAGGAACTTGATCAAATTTCAGAGCTAATTGACGACGAAGAGCTAGAGATGAGAGAGTTACAAGCAGGACCAGATTCGTTTATGTGTTCTGATCATCTTGCTGCTAGTGGAATTCTAGGCTGTTCACTTTGCAAAGATGTGCTGTGTAAGTTCCCCCCAGATATTGTTAAGATGAAGAAACCCATCTGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTTTATACATATGCTATTGTTTTCGATATATGTCCCTTCACTCTTGATGAGTTTGCTCAAGCATTTCATGATAAGGAGTCAATGCTACTTGGTAAAATTCATCTGGCCCTTCTCACACTTCTTCTATCTGACATCGAAGTGGAGCTTACTAGTGGATCTTTGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAATCAAGAGTACTCTCTGGACTCCTGGAAAAAATCCCTTAATCCTCTTACATGGATAGAAATACTCCGACAAGTTTTGATTGCTGCTGGCTTTGGTTCAAAGCAAGGTGCTTTGCGAAGAGAGGCCCTTAGCAAGGAACTGAATCTCCTAGTAAACTATGGCCTTCGTGCTGGCACCTTGAAGGGCGAGTTGTTTAAAATCTTGTCGGAGCATGGAAATAATGGGTTAAAAGTGTCTGAACTGGCAAATTCAATACAGATTGTTGAATTGAACCTTGCCAACACTACAGAAGAGTTGGAGACTTTAATATGTTCAACACTATCAAGTGATATTACTTTATTTGAAAAGATTTCGTCATCTGCATATCGACTGCGTATGTGCTCTTTCAAGAAGGACATTGATGAATTTCACTCAGATACAGAAGATTCTGGAAGTGTCGATGATGAGCTTAATCACAGTAACACATTTAGCAGTGGTGATGATTTTGAAAGTGATTCAGGCAACTCCAATTTAAGAAAATTGAAATGTGCAAACAATTCTAAAATTAAAAATAATATGCCTGTAGTGTCCACCGAAATTGATGAGAGCCATCCAGGTGAAGCGTGGCTGTTAGGATTGATGGAGAGTGAATATTCAGATTTGAGAATTGAAGAAAAGCTGAATGCATTAGTGGCTCTAACTGATCTTCTTTCTTCTGGATCGAGCATTAGGATGAAGGATCCAACGAAAGTTACATCTGATTACAATCCTATTATCCAATTCCGTGGTTCTGGAGCAAAAATAAAGAGGCCTTTAGTGAAGAAGCCCGGGTCATATTGGAACCAGACTGGAATTATGCAATACTCATCATTGAATCCTCTCTCCTGTCCAGTGGATTCCTCATTATTAATCTCTAATATCCACAGTAATGAGGAACCCTTTGAGAAGGAAAAAGAAGCAATGAAAACTGGTTCAACTGATTCACATCCCATTCAATCAGTGTTTTTGGGATCAGATCGTAGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTGGATGACCCTGGCCATAGGAGAGTTTACTTTGAATCTTCCGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGTCTGTGTGTGTCTTGTTGTCGGTTTTGGATGATAGAGGTAAACGGGAGGCACTTCTAATTGAATCTTTGGAGAAGCGGAAAGCATCTCTTTGCAGAGCCATGTCCAGGATAATGGTTAATTTTACTGGAATGTGTCGTATGTCACATTCTGATCAATCTGAGCTTGATATGATTTTAGAGGACAGTTATTCTCCAGTATCTGATGTGGACAACCTGAGTCTGACTGAGACTGCAAAAGAGGCTCTGCCATCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAGGGAGAAGAACAAGTGCAAAAATGGATCCGTCTTCAAGCATATGATTCTTGGATTTGGAATTCCTTTTATTTAAATCTTAATGTTGTCAAATATGGTAGAAGGTCTTATATTGATTCTCTAGCGAGATGTGAGAGCTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGTCATATGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATTCACTCAGCCACATGCAGGGAGAAAGAAGACAGCCACGCATTTCCAAAACACAAAATCTTATCATCACAGATCCAATCACTGAAAGCTGCAATTTATGCCATTGAGTCTGTTATGCCTGTTGATGCACTTGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAGACGACTTAGACGCACCTCAACTTTAGTTGAGCTTTTGCAGGTTGTTGCTGATTTTGTTGGTGCGATCAACGAGGATTGGTTGTTTCGATGCAATTTTCCAAATGGTGTTGTTGATAAAATCATTGCATCTTTTGCATTTATGCCCCATACTTCGTCAGCTCTTGCTCTATGGTTAGTGAAGTTGGATGCCATAATTGCTCCCTACCTGAACAGAATCCAGCTTTCTAAGAAGCAGGGTAGTAAGAGGTGA 3405 0.4 MLRSSLVTQFLPSSLSLNPLLDQSFERCSEYCKKPMGVQRKTHSQLQALDNFYTEERYPTPRAIKDYAAALGLTYKQVRDWFVEKRKREKRENGVLVPSCSLVSNQKANASSPSRYDITVTRNARKKKRHKCLQELFPADYILHKVFRKDGPHLGEEFDSLPTGAFLHHSGFVVNGYPTNFKKGLKNTTASLEDQGPMKRRKVLKSAIGSHPDSNEKTPIRKHGIGKGLMTVWRATNPNAGDVPIGFVRTRSENKKKPECENKKPRETLIMTAKSNQDVIQKQSQKEKCELVLDRAMPEELDQISELIDDEELEMRELQAGPDSFMCSDHLAASGILGCSLCKDVLCKFPPDIVKMKKPICLQPWDSSPEIVKKLFKVFHFLYTYAIVFDICPFTLDEFAQAFHDKESMLLGKIHLALLTLLLSDIEVELTSGSLPHLNKSCNFLALLHSVENQEYSLDSWKKSLNPLTWIEILRQVLIAAGFGSKQGALRREALSKELNLLVNYGLRAGTLKGELFKILSEHGNNGLKVSELANSIQIVELNLANTTEELETLICSTLSSDITLFEKISSSAYRLRMCSFKKDIDEFHSDTEDSGSVDDELNHSNTFSSGDDFESDSGNSNLRKLKCANNSKIKNNMPVVSTEIDESHPGEAWLLGLMESEYSDLRIEEKLNALVALTDLLSSGSSIRMKDPTKVTSDYNPIIQFRGSGAKIKRPLVKKPGSYWNQTGIMQYSSLNPLSCPVDSSLLISNIHSNEEPFEKEKEAMKTGSTDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEESVCVLLSVLDDRGKREALLIESLEKRKASLCRAMSRIMVNFTGMCRMSHSDQSELDMILEDSYSPVSDVDNLSLTETAKEALPSAGAVVIEAGKKGEEQVQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLYWRDERHCKICHMTFELDFDLEERYAIHSATCREKEDSHAFPKHKILSSQIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLVELLQVVADFVGAINEDWLFRCNFPNGVVDKIIASFAFMPHTSSALALWLVKLDAIIAPYLNRIQLSKKQGSKR 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g0013 1134 ProSiteProfiles 'Homeobox' domain profile. 42 92 IPR001356 GO:0003677
Bisa01g0013 1134 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 650 689 IPR028942 -
Bisa01g0013 1134 MobiDBLite consensus disorder prediction 590 620 - -
Bisa01g0013 1134 Pfam Homeodomain 41 91 IPR001356 GO:0003677
Bisa01g0013 1134 ProSiteProfiles DDT domain profile. 369 428 IPR018501 -
Bisa01g0013 1134 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 609 697 IPR044977 GO:0006357
Bisa01g0013 1134 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Bisa01g0013 1134 SMART HOX_1 34 96 IPR001356 GO:0003677
Bisa01g0013 1134 Pfam DDT domain 372 425 IPR018501 -
Bisa01g0013 1134 CDD homeodomain 39 93 IPR001356 GO:0003677
Bisa01g0013 1134 Coils Coil 530 550 - -
Bisa01g0013 1134 SMART testlast3 369 428 IPR018501 -
Bisa01g0013 1134 Coils Coil 301 321 - -
Bisa01g0013 1134 Gene3D - 29 99 - -
Bisa01g0013 1134 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 777 851 IPR028941 -
Bisa01g0013 1134 MobiDBLite consensus disorder prediction 601 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g0013 Bisa-ChrBisa01 353714 380402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g0013 266 1117 Homeobox Transcription Factor Family AT1G28420 26.275 1.73e-74 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bisa01g0013 WSD 8.5e-13 No_clan