LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g0010	ATGCACATTCATGCAAACGAAAAGCAGAAGACTTATTCAACCTTACCCTCCATTATCCCTGAGCCAGAATTGCTGCTCAAGTTCAAGGACTCCCTGCAAAACGAAAATAACACTGCATTGTCCACTTGGAATATATCTACGTCGTCTCCATGTTCAGGCGAACATCCCAATTGGGTTGGTGTTCTGTGTACAGAAGAAGGGAAAATTTGGGGGTTGAAACTTGAGAATATGGGGCTCAGGGGGGTCATTGATGTGGACGCCCTCCAACAGTTACCAAATCTCAGAACCCTGAGTTTCATGAACAACGATTTCGACAGCACTTGGCCAGAATTAAACAAGCTAGCTCCTCTCAAGACATTTTATCTTTCTAATAATAAGTTTTCCGGAGAGATTACTGCTAAGACATTTCAGGGAATGCATTGGTTGAAAAAAATCCATTTAGCAAACAATCGCTTTACGGGTAACATTCCAACTTCCTTAACATTGCTACCTAGGCTTACCGAGTTGAGGTTGGAGGGCAACAAATTCAGCGGCCGCATTCCCAATTTTCTGCAGAAGAAACTCACATCTTTTAGCGTAGCTCAGAATCAGTTGCATGGCCAAATACCACCCGCCCTCGCTACCCTCCCACCCTCTTCCTTCTTTGGCAACGAAGGGTTATGTGGAACCCCATTGGGTGCGTGCCGTTCCTCCAAAAATCCCTCGATTATCAGTATTGTGGTGATTGCCATAGTGGTTGGTGTGGCCATAATAGTGATCGGGGCAATAATCTTTATCCTTGTTCGAAGAAAAAACCGAGGGGCAGCATCGGTGGAGAATCCACAATCCAACCTGCAAAACATGGAAGGAGATGAAGGCAGTAACCACTCGCACCGCAGCAAAAGAGGAGAGAACATGAAGTTGTGTCTTGTAAGGAAAGACAGGGAGAGGTTCGATTTGCAAGACTTACTAAGAGCCTCCGCTGAAATACTGGGCAGTGGTTGCTTCAGTTCTTCCTACAAGGCTGCTTTGTCCAATGGCCCCATGATGGTGGTGAAGAGGTTTAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCATGAGCACATGAGGAGGCTAGGAAGGTTGGATCATCCTAATTTGCTTCCTCTAGTGGCTTACTATTACAGAAAGGAGGAGAAACTCTTGGTCACAGACTATGTTCAAAATGGCAGCTTGGCTCTTCACCTTCATGGACACCGATATGTAGGACAGGCAGGGCTTGATTGGCCAACCCGATTGAAGATTGTGAAAGGCATCACAAGAGGTCTTGAACATCTGTACAAGGAGATGCCAACCCTAATTGCCCCACATGGAAATCTGAAATCATCCAATGTGCTTCTAACTCAATCTTTTGAGCCACTTTTGAATGACTATGGGTTGGGTCCAGTGATGAACCAAGAGCTTGCTAAGGAAATGATGGTGATGTACTGGTGCGCTGAGTATGTAGAACACAGTCAGATTACAAGGAAGACGGACATATGGAGTCTGGGGATCCTGATTATGGAGATATTGAGTGGGAAGTTGATAATGGGAGGGAAAGGTGGGGAGGGGGCCCGGGATATGGTGAGGTGGGTGAATTCAGTGGCGCCAGAAGAGTGGAGCAGGGAGGTGTTTGAGAAGGAGATGGGGGGATGCAAGAACAGCGAGGGGGAGATGGGGAAGCTTTTGAAGATTGGGTTGGCTTGCAGCGAAGGGGATGTGGAGAAGAGATTGGACATCAAAGAAGCTGCGGAGAGAATACATGAGGTGAAAGAGAGGGATCACGACGACGATTTCTATTCGTCGTATGCCAGTGAGGCCGAGATGCGGTCTTCTAGGGGAATGTCAGATGAAATCACTTTCTCCATAAATGGTTGA	1878	0.4659	MHIHANEKQKTYSTLPSIIPEPELLLKFKDSLQNENNTALSTWNISTSSPCSGEHPNWVGVLCTEEGKIWGLKLENMGLRGVIDVDALQQLPNLRTLSFMNNDFDSTWPELNKLAPLKTFYLSNNKFSGEITAKTFQGMHWLKKIHLANNRFTGNIPTSLTLLPRLTELRLEGNKFSGRIPNFLQKKLTSFSVAQNQLHGQIPPALATLPPSSFFGNEGLCGTPLGACRSSKNPSIISIVVIAIVVGVAIIVIGAIIFILVRRKNRGAASVENPQSNLQNMEGDEGSNHSHRSKRGENMKLCLVRKDRERFDLQDLLRASAEILGSGCFSSSYKAALSNGPMMVVKRFKQMNNVGKEEFHEHMRRLGRLDHPNLLPLVAYYYRKEEKLLVTDYVQNGSLALHLHGHRYVGQAGLDWPTRLKIVKGITRGLEHLYKEMPTLIAPHGNLKSSNVLLTQSFEPLLNDYGLGPVMNQELAKEMMVMYWCAEYVEHSQITRKTDIWSLGILIMEILSGKLIMGGKGGEGARDMVRWVNSVAPEEWSREVFEKEMGGCKNSEGEMGKLLKIGLACSEGDVEKRLDIKEAAERIHEVKERDHDDDFYSSYASEAEMRSSRGMSDEITFSING	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g0010	625	MobiDBLite	consensus disorder prediction	270	284	-	-
	Bisa01g0010	625	Gene3D	Phosphorylase Kinase; domain 1	283	393	-	-
	Bisa01g0010	625	FunFam	pollen receptor-like kinase 1	287	393	-	-
	Bisa01g0010	625	FunFam	Nuclear pore complex protein NUP107	19	182	-	-
	Bisa01g0010	625	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	20	594	IPR046959	-
	Bisa01g0010	625	Pfam	Leucine rich repeat N-terminal domain	23	63	IPR013210	-
	Bisa01g0010	625	Gene3D	Ribonuclease Inhibitor	187	228	IPR032675	-
	Bisa01g0010	625	SUPERFAMILY	L domain-like	49	214	-	-
	Bisa01g0010	625	MobiDBLite	consensus disorder prediction	270	296	-	-
	Bisa01g0010	625	Pfam	Protein kinase domain	321	530	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g0010	625	Gene3D	Transferase(Phosphotransferase) domain 1	394	610	-	-
	Bisa01g0010	625	Pfam	Leucine rich repeat	117	176	IPR001611	GO:0005515
	Bisa01g0010	625	ProSiteProfiles	Protein kinase domain profile.	318	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g0010	625	SUPERFAMILY	Protein kinase-like (PK-like)	322	588	IPR011009	-
	Bisa01g0010	625	Gene3D	Ribonuclease Inhibitor	20	185	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g0010	Bisa-ChrBisa01	241873	244123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g0010	12	622	Receptor kinase-like Gene Family	AT5G35390	50.077	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Bisa01g0010		Pkinase	7.2e-27	CL0016