Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01873 ATGGCAAGAATCAAGAAGACCACTGGCCGCCGAAAGATAGAAATTAAGAAGATAAGCAGAGAAAGCAACCTCCAAGTGACATTTTCTAAGCGTCACAATGGGATTTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGCAGCTGAGGTTGCTATCATCATCTTCTCTCCTGGAAATAAAGTCTTCTCTTTCGGCCATTCAAGCGTTAATGATGTGATTAATCGCTTGCTTACCGGAGCCCCAACACAAACCTCCGGTGCCATACAAGTCGTTCAGGCTCATCGCAATGCTAACACGTGTGACCTTAATGCCAAACTAACTCAATTTTCTGAGCTGCTAGATATGGAGAAGAAGCATAGCAAGGACCTGGACAAGCTGTTGAAGCCTACGCAAGAACAATTTTGGTGGGCTAGCCCAATTGAAGAGATGAGCAAGCCTCAGCTCGAGCTCTTGATGTCCACCATGGGAGAACTCAAAAAGACAATCACTCTGCAAGTTGATACGATGCGGATTAAGGGTTCTGACATAGTTCAATTTTCTGCTGGAAATTCTTCTGGCCAAGTTGCTCCACCCCCAGAACCACAATCGTTAATTCAACCATCAATTGTCCCAGAGAATGGCCAGTTTGATGGGAACATGATGACGATACCACTGACTATCAATGATTTAAGTACCATGAGAGGATATGGTCATGGTTTTTATTGA 705 0.444 MARIKKTTGRRKIEIKKISRESNLQVTFSKRHNGIFKKASELCTLCAAEVAIIIFSPGNKVFSFGHSSVNDVINRLLTGAPTQTSGAIQVVQAHRNANTCDLNAKLTQFSELLDMEKKHSKDLDKLLKPTQEQFWWASPIEEMSKPQLELLMSTMGELKKTITLQVDTMRIKGSDIVQFSAGNSSGQVAPPPEPQSLIQPSIVPENGQFDGNMMTIPLTINDLSTMRGYGHGFY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01873 234 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Bach9g01873 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Bach9g01873 234 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Bach9g01873 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 PANTHER MADS BOX PROTEIN 10 163 - -
Bach9g01873 234 Gene3D - 89 176 - -
Bach9g01873 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bach9g01873 234 CDD MADS_MEF2_like 9 75 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01873 Bach-Chr9 26808534 26809238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01873 4 202 Type I MADS-box Gene Family AT5G60440 44.554 2.44e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach9g01873 SRF-TF 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01873 - - cit:102622898 202.986