Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01728 ATGATCATGAGGCAAAGTTGTGGTGAGAAACGACCTGGTGAAGGGTTAAGAAGGGGAATCAAGGTAAATCGTGAAGGTGAAGCTGGTGTTCTAGTTGGCAATGGTGAGGAGATTCACGTGGGTTATGTGAGGTTCTCTGGTGAGAAGATTAGGCAAGAGAGGATTTGGGTGAGTGAAATTGGGTTCTCTGATGAATCAAGAATGCAAATCTTCGTTAAGACTCTCACCGGCAAGACGATAACGTTGGAGGTGGAGAGCTCCGACACCGTCGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCGGACCAGCAGCGGTTGATTTTCGCCGGAAAGCAATTGGAAGATAGTTGTACGCTTGCCGATTACAACATCCAGAAGGAATCAACCCTTCACCTGGTTCTTCGTCTCCGTGGAGGGAAGCAGATTTTCGGTAAAACCCTCAAAGCTCTCACTTTAAGTTCAGCCAAGTCTGCGGGTAGGAATTCTTCTGGCCGTATCACAATTTTTCATCGAGGTGGCGGAGCTAAGCGGTTGCAGCGAAAAGTTGATCTGAAACGGAGCAATTCGTCTATGGGTATCGTAGAAAGGATAGAATATGATCCGAATCGTTCTTCTCGTATCGCTTTAGTGCGATGGGTCGAGGGTGTGCAGCCGCACCGCCAGGGTAAGTGCAACTCCTTAAAGGAGTTTACTCCCCCGCCGAAGATTCTCGAACCTACTACGACCACGGTCCGCGGCCAATTTTCTTTCTCGTCTTTGCCTGGGAAGGTGGGTGAAAGAAAGGTAGCTTCTTTCCCTCCTCAGCTGGTGGCGGGTTATAGAGTAGTTGGATTTCCTGCCGCAATGCCTGCTTCGATAAAGAGCCCGGTTAATAGTAAGGCCGCGGGAAGCAAAAAAAATTGCGTGAGTGACGTTTTCTTATCCGCTTTCTCCTCTCCCAAGGACAAGGGAGAGACTGCATTGCTTTCTTGGCCAAGGATAGCGGTTGCTGGGGCAAAGCCGGGTTTCTTTGTTCCGCGAGTGCGAGAACTCAGTGGAGAAAACACCTTTTCTCTTTCCGAGGTCCAAAAGTGGAGAACAAATAGCATATTCTGGGAACATAGGATCAAACGTAAAGCAGCGGTTTCTTGGCAGAGTTTTAGACCGCAAGATACTTTGTCGCTTGTTGGAGCTGCTAAGCATAACTAG 1200 0.485 MIMRQSCGEKRPGEGLRRGIKVNREGEAGVLVGNGEEIHVGYVRFSGEKIRQERIWVSEIGFSDESRMQIFVKTLTGKTITLEVESSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEDSCTLADYNIQKESTLHLVLRLRGGKQIFGKTLKALTLSSAKSAGRNSSGRITIFHRGGGAKRLQRKVDLKRSNSSMGIVERIEYDPNRSSRIALVRWVEGVQPHRQGKCNSLKEFTPPPKILEPTTTTVRGQFSFSSLPGKVGERKVASFPPQLVAGYRVVGFPAAMPASIKSPVNSKAAGSKKNCVSDVFLSAFSSPKDKGETALLSWPRIAVAGAKPGFFVPRVRELSGENTFSLSEVQKWRTNSIFWEHRIKRKAAVSWQSFRPQDTLSLVGAAKHN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01728 399 ProSitePatterns Ubiquitin domain signature. 94 119 IPR019954 -
Bach9g01728 399 FunFam Polyubiquitin Ubiquitin 68 143 - -
Bach9g01728 399 Pfam Ubiquitin family 70 141 IPR000626 GO:0005515
Bach9g01728 399 Gene3D - 150 225 IPR012340 -
Bach9g01728 399 SUPERFAMILY Nucleic acid-binding proteins 145 220 IPR012340 -
Bach9g01728 399 Gene3D - 62 149 - -
Bach9g01728 399 SMART Ribosomal_L2_2 163 249 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bach9g01728 399 SMART ubq_7 68 139 IPR000626 GO:0005515
Bach9g01728 399 Pfam Ribosomal Proteins L2, RNA binding domain 163 219 IPR022666 GO:0003735|GO:0005840|GO:0006412
Bach9g01728 399 CDD Ubl_ubiquitin 68 143 - -
Bach9g01728 399 FunFam Ribosomal protein L2 mitochondrion 147 230 - -
Bach9g01728 399 ProSiteProfiles Ubiquitin domain profile. 68 143 IPR000626 GO:0005515
Bach9g01728 399 PANTHER UBIQUITIN 68 152 - -
Bach9g01728 399 PRINTS Ubiquitin signature 78 98 IPR019956 -
Bach9g01728 399 PRINTS Ubiquitin signature 120 141 IPR019956 -
Bach9g01728 399 PRINTS Ubiquitin signature 99 119 IPR019956 -
Bach9g01728 399 SUPERFAMILY Ubiquitin-like 60 144 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01728 Bach-Chr9 19832641 19834496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01728 68 143 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.053 1.23e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01728 - - vvi:7498640 364.385