Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01707 ATGTCACGAAGGAGGGCTGATCGAAACTTGAGCACCTTCGAAGTTCAAAGTGAGCAAGAGGAGAAGAGGGTGAGAAGAGCAGAGATGCCAGACTACGAAGAAAGATACCATGGTAATGGTGAGAACGTTGAAACTTACGATGGTGGTTTCTCTCCTCTGCCTCGAGAAAGTAGCCATGGCGGTCCTGACGATCACAGCGACTCCAAATCTCACCATGGATCTCGTGATTATGACAGAGAATCTTCAAGAAGCAGGGAAAAGGAACGAGAGAAAGGGAGAGATAAGGAGAGGAAGAGAGAAAAGGAGAAAGACAGGGATAGGGATAGAAGCAGGGAAAGGGACAGAGATGGAGAGAGAAGTAGAGATAGGGCAAGAAGCAAAGACAGGGAAAGAGGTCGGGATGGGGAGAAGGAAAGGGACCGTGATCACCACAGAGATAGACACAGAGACCGAAGTGAAAGGAGGGAAAGGGGCAGGGATAGAGATGATGATGATTATTACCGAGGCCGGGACTATGACAGACGAAAGGATTACGATAGAGATAGAGAAGATGGGAACAGACGCAGATCTCATTCACGTTCAAGGCATAGATCAAGGTCCCGTTCCCGCTCGCGCTCCCGTTCCCGCTCAAAGAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCAATGTTAGCTAATGCTGCTGCTGCTGCTGTTGCAGGTCAGATCCCTGGGGCAAGTCCTGCTATTCCGAGCATGTTTCAAAATGTGTTTCCATTGGCTACCAGTCAGGTACAACCATTTGGTGCGCTTCCTGTCATGCCAGTTCAGGCTATGACACAACAGGCTACTAGACATGCTAGGCGGGTCTATGTTGGTGGACTTCCTCCTACTGCAAATGAACAGTCGGTTGCAACTTTCTTCAGTCAGGTCATGGCTAATATTGGAGGAAACACTGCTGGTCCAGGTGATGCAGTGGTTAATGTTTATATTAACCATGACAAGAAGTTTGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAACGCAATGGCTCTAGATGGGATTATTTTCGAGGGGGCGCCTGTTAAAGTGAGGAGACCTACTGATTATAATCCTTCTTTAGCTGCAACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTGGGTGCTGTTGGCTTAACTCCTGGCTCAGCTGGTGGACTTGATGGTCCTGATCGCATTTTTGTGGGGGGGCTTCCTTATTACTTTACAGAAACACAAATCAGGGAGCTATTGGAGACATTTGGTCCCCTTCGGGGTTTTGACTTGGTGAAAGATAGAGAAACAGGAAACTCAAAAGGCTATGCATTCTGTGTTTACCAAGACCTCGCAGTTACAGATATAGCTTGTGCAGCTTTGAATGGAATCAAAATGGGAGATAAGACTCTTACTGTTAGACGAGCCAATCAAGGTGCTAACCAGCCTAAACCTGAGCAAGAGAGCATATTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTCATGCTTCAACCGGCATTAGTGGCTACAAAGGTCGTATGTTTAACTCAAGCAGTATCTGCTGACGAGCTCAAAGAAGATGAGGACTATGAAGAGATTGTTGATGATATGAGACAGGAGTGCTCAAAATTTGGTAATTTGGTGAATGTTGTGATCCCTCGCCCAAATCCAGACGGGGAACCATCAGCTGGATTGGGAAAGGTGTTTTTGGAGTATGCTGATATTGAGGGTTCTACAAAGGCTCGTTCTGGATTGAATGGACGAAAATTTGGTGGGAATCAAGTCGTGGCTGTCTTTTACCCAGAGAATAAATTTGCTCAGGGAGACTATGATGGCTAGTTTATGATGTCTCGCTTGTATTGGTTCTTAGCTCTACGTTTGATGTTTTATAAAGATTCCTTTGCAGAAGAATTTTCTATTGTATAATTCCCTCATTTATATGCCTCTCGTTTTGTAGAATACCATTTAGCTTAACGGGTAGCGAAGTCATGGAGAAAACTGGTTCATAGATTGATGTTCTGTTTGCTACTTGTGTTTAACTCTAGTAAGATTTGATGTGAATTTGTTGCGCACATAAATCAGAACCTG 2109 0.4561 MSRRRADRNLSTFEVQSEQEEKRVRRAEMPDYEERYHGNGENVETYDGGFSPLPRESSHGGPDDHSDSKSHHGSRDYDRESSRSREKEREKGRDKERKREKEKDRDRDRSRERDRDGERSRDRARSKDRERGRDGEKERDRDHHRDRHRDRSERRERGRDRDDDDYYRGRDYDRRKDYDRDREDGNRRRSHSRSRHRSRSRSRSRSRSRSKSKRTSGFDMAPPASAMLANAAAAAVAGQIPGASPAIPSMFQNVFPLATSQVQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTQAVSADELKEDEDYEEIVDDMRQECSKFGNLVNVVIPRPNPDGEPSAGLGKVFLEYADIEGSTKARSGLNGRKFGGNQVVAVFYPENKFAQGDYDG 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01707 619 Coils Coil 85 105 - -
Bach9g01707 619 SMART rrm1_1 406 479 IPR000504 GO:0003723
Bach9g01707 619 SMART rrm1_1 519 606 IPR000504 GO:0003723
Bach9g01707 619 SMART rrm1_1 286 364 IPR000504 GO:0003723
Bach9g01707 619 MobiDBLite consensus disorder prediction 58 188 - -
Bach9g01707 619 FunFam U2 snRNP auxiliary factor large subunit 280 381 - -
Bach9g01707 619 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 93 617 IPR006529 GO:0003723|GO:0005634|GO:0006397
Bach9g01707 619 Gene3D - 513 618 IPR012677 -
Bach9g01707 619 CDD RRM2_U2AF65 405 481 - -
Bach9g01707 619 Gene3D - 280 381 IPR012677 -
Bach9g01707 619 CDD RRM3_U2AF65 517 605 - -
Bach9g01707 619 SUPERFAMILY RNA-binding domain, RBD 160 365 IPR035979 GO:0003676
Bach9g01707 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 524 610 IPR000504 GO:0003723
Bach9g01707 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 476 IPR000504 GO:0003723
Bach9g01707 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 602 IPR000504 GO:0003723
Bach9g01707 619 FunFam U2 snRNP auxiliary factor large subunit 382 495 - -
Bach9g01707 619 FunFam U2 snRNP auxiliary factor large subunit 513 618 - -
Bach9g01707 619 MobiDBLite consensus disorder prediction 1 41 - -
Bach9g01707 619 CDD RRM1_U2AF65 284 366 - -
Bach9g01707 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 368 IPR000504 GO:0003723
Bach9g01707 619 MobiDBLite consensus disorder prediction 189 211 - -
Bach9g01707 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 483 IPR000504 GO:0003723
Bach9g01707 619 Gene3D - 396 501 IPR012677 -
Bach9g01707 619 SUPERFAMILY RNA-binding domain, RBD 406 610 IPR035979 GO:0003676
Bach9g01707 619 PANTHER RNA-BINDING PROTEIN 62 618 - -
Bach9g01707 619 MobiDBLite consensus disorder prediction 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01707 Bach-Chr9 19346854 19354052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01707 407 598 Eukaryotic Initiation Factors Gene Family AT1G22760 26.396 2.57e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01707 K12837 - gmx:100793801 738.413