Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01400 ATGGCTTTGACCATAGTAGCAATATCGGCAGTTTCTACAGTGTTAAGCATTGTAGGTCTTCAATTTTGGACAGAGTTGCCATTAGGTAAACTTAATTCAGATGGACTAATCAGCAAGAATTTGTTTGATTTGGAGAGTGCCAACCATGCCATTGAGTTGCTTTCGGGATCTTATGCCACCATATGGTTGCTGGCAAATTTTATTATCAATATATTTATTCTACTCAATCTTTGTCTCAAGGCTATTTTCTTCTCGGAGTTATATCCTTCTGAAACTCGGAAGCTGCTTGAGCGTCTCATTAATTATGTCATTTACAAGGGAACATTTCTACCTCTTATTGTGCCACCAACAATATATCTTGCTGGTCTGTGGTCTACCTGGTTGATTTTACTATGTTCGTTAAAGATGTTTCAATCTTTGGCTAGAGACCGTTTGGAACGACTGAATGCATCTCCATCTGCTAGACCTTGGACATATTTTCGTGTATTCTCAGCATTGCTATTTGTTCTTTTGGCTGATGTTTTCTGGATAAGACTGTGTCTGGTGATATATAAAATACTTGGTAGTTCTATGTTATTGTTGCTGTTCTTTGAGCCTTTGAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTCCAATTGCTTGATATATGGCTCCACCATTCAGCATACACCAGCGCTGATTGCCAAAGGTCCAAATTTTTTGACACATTAGCAGCAGGATCATTATTGGAATGGAAGGGGATTCTTGTCCGGAACTTGGGATTTTTCCTAGATATGGCAACTTTCTTAATGGCACTTAGCCATTACTTGTATATTTGGTGGCTTCATGGCATGGCATTCCACCTTGTAGATGCAGTGCTATTTCTAAACATACGTGCATTGCTTAGTGCTATGATAAAGCGTGTGAAAGGCTTTATCAGGTTAAGGATAGCTCTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACAGTTGAGGAGCTACGAGCATATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCTAAGGCTAAAAGGCTAAACTGCAATCATCTGTTCCATCTTGCATGTTTGAGATCTTGGTTGGACCAAGGCCTGACTGAAATTTATACTTGTCCAACATGTCGAAAGCCACTTTTTGTTGGTCAGCGGGAAAATGAGGCAAACCCCAACACAGGAGAAATATCGAGTGATGAACAGCTTGCCAGTCAAATAAGTGCAGGACTTGATCGGTCAAACTCTGCTAGACACACCATGCCTGCAGGATTATATCCCAATCAGACACCAAACTCTGTGGAAGGGATTCCTTGGAGGGGTGCAAGAGTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCGTCTACAGCTGTCAGGTCAGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTACTCTTGAGGATACTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAGCTGTTCCCCCTGCTGGTGGAAGATTCCCTGCACGCTCTGGTGGTTTACACCTGAGGACTCCTTCACAATCCACAAATGATGATTTGGCAAATTTACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTTCCTCATATACCAGACGACTTAATCTTTCAGGACTTGCAGCGGACAAATTCGGCCACAGTTACTGTGAATAATCTTCTCCAAATGTGATGTATTGTGATTCATGATATAGTTTCTGCACATCAAGTATATGAAGAATCAAAGACATGCACGACCTTAGGTGTCTAGTTACAACTGTGTCCTCGGAAATACATACAGTTCATTATCTGTATATAGAGTCATAACATTTGTACTCAGAAAAGATAGCAGTAATATATGTTTCCTCTATCTTTTTGGATCTGCGAAAAT 1959 0.4181 MALTIVAISAVSTVLSIVGLQFWTELPLGKLNSDGLISKNLFDLESANHAIELLSGSYATIWLLANFIINIFILLNLCLKAIFFSELYPSETRKLLERLINYVIYKGTFLPLIVPPTIYLAGLWSTWLILLCSLKMFQSLARDRLERLNASPSARPWTYFRVFSALLFVLLADVFWIRLCLVIYKILGSSMLLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHSAYTSADCQRSKFFDTLAAGSLLEWKGILVRNLGFFLDMATFLMALSHYLYIWWLHGMAFHLVDAVLFLNIRALLSAMIKRVKGFIRLRIALGALHAALPDATVEELRAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVGQRENEANPNTGEISSDEQLASQISAGLDRSNSARHTMPAGLYPNQTPNSVEGIPWRGARVDSGWLHSWPNQGVDGAGPSTAVRSVGLGRVQMMMRHLASVGETYAQTTLEDTAWSLWPINPSQASASGSAVPPAGGRFPARSGGLHLRTPSQSTNDDLANLLAMAETVREVLPHIPDDLIFQDLQRTNSATVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01400 586 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Bach9g01400 586 Gene3D - 545 585 - -
Bach9g01400 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 391 IPR013083 -
Bach9g01400 586 SUPERFAMILY RING/U-box 326 385 - -
Bach9g01400 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Bach9g01400 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Bach9g01400 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 586 - -
Bach9g01400 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Bach9g01400 586 Pfam Ring finger domain 336 380 IPR001841 -
Bach9g01400 586 CDD RING-H2_AMFR 336 383 - -
Bach9g01400 586 SMART ring_2 338 379 IPR001841 -
Bach9g01400 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01400 Bach-Chr9 12234040 12240482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01400 49 421 C3H Transcription Factor Family AT3G16090 28.293 1.27e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01400 K10636 - gmx:100819656 944.495