Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01329 ATGCAAGAGGACAATCCAGGTTCCAGAGTGCACTCGCTACTCGGCGGGAGTCAAGAGCATATTAAGCTGAGACCAGACCAGAGAACAGAGACAGACAAGAGAGAAACGATGCCGAAGAAGAACCATAGTGACAGTGATGAAGAAGACATATTCTACTACCGATATTGTTCTTCTTCTTCAGCAGCAGCGTCAAATCCCACAAAATCGCACAAAAAATCCGGCGGTTCTGGTGGATTAGCACCGTCAAAATCCACTATTTACGTCTCCAACATCGACTACTCCCTCACCAATTCCGACCTCCATACTCTCTTTTCCACCTTCGGCAAAATCGCTCGAGTCACCATTCTCAAGGATCGAGTCACCCGCCAAAGCCGTGGCGTCGCTTTCATCCAATTCGTTTCCCGCGACGATGCCCACAAAGCCGCTCACGAAATGAACCGAAAAATCCTCAACGGCAGGACCCTGACGGCTTCAATCGCCGCCGACAATGGCCGTGCGACTGAGTTTATAAAGAAAAGGGTTTACAGGGATAAAAGTCGGTGTTATGAATGTGGGGAATCTGGGCATTTGTCTTATGAGTGTCCCAAGAATCAATTGGGTCCCAGAGAGCGTCCGGCGCCGAAGCGCGGTAGAAGGGGTGGCGGCAGCGGCGGTGTCCATCGGATGGAGGATGACGACGATGGATCCGATGATGTACATCAGTTTGAGGATGATAATTGGGCTTCGGTTGTGGATGATGAAGCGGATGAGAGGTTGTTGAGAGGAAATGAGACGGTTCTAGAGAAGAAGAAGGCTAAGAAAGTTAGCTACTTCAGCGATGAGAGCGACGCAGAAGATGATTGA 843 0.4994 MQEDNPGSRVHSLLGGSQEHIKLRPDQRTETDKRETMPKKNHSDSDEEDIFYYRYCSSSSAAASNPTKSHKKSGGSGGLAPSKSTIYVSNIDYSLTNSDLHTLFSTFGKIARVTILKDRVTRQSRGVAFIQFVSRDDAHKAAHEMNRKILNGRTLTASIAADNGRATEFIKKRVYRDKSRCYECGESGHLSYECPKNQLGPRERPAPKRGRRGGGSGGVHRMEDDDDGSDDVHQFEDDNWASVVDDEADERLLRGNETVLEKKKAKKVSYFSDESDAEDD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01329 280 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 41 279 IPR044598 GO:0000398|GO:0005689
Bach9g01329 280 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 35 168 - -
Bach9g01329 280 MobiDBLite consensus disorder prediction 202 243 - -
Bach9g01329 280 Gene3D - 17 168 IPR012677 -
Bach9g01329 280 Gene3D - 171 212 - -
Bach9g01329 280 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Bach9g01329 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Bach9g01329 280 SMART rrm1_1 85 158 IPR000504 GO:0003723
Bach9g01329 280 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 171 206 - -
Bach9g01329 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 155 IPR000504 GO:0003723
Bach9g01329 280 Pfam Zinc knuckle 180 196 IPR001878 GO:0003676|GO:0008270
Bach9g01329 280 ProSiteProfiles Zinc finger CCHC-type profile. 180 196 IPR001878 GO:0003676|GO:0008270
Bach9g01329 280 MobiDBLite consensus disorder prediction 192 243 - -
Bach9g01329 280 SMART rrm2_1 85 158 IPR003954 GO:0003676
Bach9g01329 280 SUPERFAMILY Retrovirus zinc finger-like domains 168 197 IPR036875 GO:0003676|GO:0008270
Bach9g01329 280 CDD RRM_ZCRB1 83 158 IPR034219 -
Bach9g01329 280 MobiDBLite consensus disorder prediction 1 45 - -
Bach9g01329 280 MobiDBLite consensus disorder prediction 60 81 - -
Bach9g01329 280 MobiDBLite consensus disorder prediction 21 45 - -
Bach9g01329 280 SUPERFAMILY RNA-binding domain, RBD 81 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01329 Bach-Chr9 10985552 10986394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01329 84 160 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 5.82e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01329 K13154 - qsa:O6P43_008664 354.755