Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach9g01277 | ATTGAACCTCGTTCTCTCCTGCCCTTTCTTCCAATTTTCCAACGAGCTCGCCGCTGAAATCTCCGAATCTGACCGAAACTTGGGTTTTGACTGTGCAATTACGTGGTGCCTGTGGATCACAAACTCCACCTAAAATCCAAACAAGGAAAAGGATAACACTTTGGGTGCTGCATCTTTTCGATCGGGGTATTCAGGATAAATGTCTGAGACGACGATGGAAGAAACTGGCGAAAGTAGAGAGAGGCCAATTTTTAGAGATATTAGACGCTATTTCTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGGCCTTAATAACATCCCACATTAATACTCACCACAAGGAGGAGATGGAGAAAAAAGCAAATCTTGATAGAGATTGTGAAGCAGAGGGTATAAAATCCAACACGTGCAGTAAATGTGGTGCTAGTTTCAAGAAACCTGCCTACTTGATACAACACATGCAAAGCCATTCGCTTGAGGGAAGTCACTTAAGAAAATAAGATCAATGGAATGTAGTGTGAAGCATTGGATCCCAGAATGAGAACTCCAAAATGCATGAGGCATTATGTTCTGACTTGATGGATCAGTATCAGGCAGGGAGACCTCCTGAGAAGCTCCATCAAGGGTGCCTCAGTCACGCTCTTCAATGTGAGAGGCCATATGTTTGTACACTTGATGATTGTCATGCAAGTTATAGAAGAAAGGACCACTTGACTCGTCACCTTCTGAAGCATCAAGGGAAAACTTTTGAATGTCCAATTGAGGGTTGCAACCGTGCCTTTTCTCTTCAAGGGAATATGACAAGGCATGTCAAGGAAATTCATGATGAGAATTCCAACTCTCCTGGTGTTGAAAGTGAGAAGCTGCATGTTTGTCAAGAAATTGGTTGTGGAAAGGTTTTCAAATTTGCGTCAAAGCTACGAAAGCATGAAAACTCTCATGTTAAGCTGGAGTTCACAGAAGCACTCTGTGCAGAACCGGGTTGTATGAAAGTTTTTACTAATGTCCAATGCCTTAGCGCCCACGTTAAATCCTGTCATCAATATCTTGATTGTGAGATTTGTGGGGTTAAGCAACTGAAGAAGAACATCAAGAGGCACCTCCGTATGCACGAAACTGATAGTTCATCAGAGACGTTTAAATGTGAATACAAGGATTGCAGTCGGACATTCTCAAGTAAATCTAATCTTGATAAGCACGTGAAGGCTGTGCACTTTGAAGACAAACCTTTTGTGTGTAGCTTTCCTGATTGTGGTATGAGATTCTCTTACAAGCATGTGAGAGATAACCATGAAAAATCTGGGATACATGTTTATACCCTTGGGGATTTTGAACAAGGTGATGAAGAGTTCAGGTCAGGGCCCAGGGGTGGCCGGAAGAGGAAGTGTCCAACGGTTGAAATGTTGATTAGGAAAAGAATTACTCCGCCCACTCAATCGGAGCATTGGTTATTCACAGAAGACACCTAG | 1471 | 0.4276 | MHEALCSDLMDQYQAGRPPEKLHQGCLSHALQCERPYVCTLDDCHASYRRKDHLTRHLLKHQGKTFECPIEGCNRAFSLQGNMTRHVKEIHDENSNSPGVESEKLHVCQEIGCGKVFKFASKLRKHENSHVKLEFTEALCAEPGCMKVFTNVQCLSAHVKSCHQYLDCEICGVKQLKKNIKRHLRMHETDSSSETFKCEYKDCSRTFSSKSNLDKHVKAVHFEDKPFVCSFPDCGMRFSYKHVRDNHEKSGIHVYTLGDFEQGDEEFRSGPRGGRKRKCPTVEMLIRKRITPPTQSEHWLFTEDT | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach9g01277 | 305 | Gene3D | Classic Zinc Finger | 225 | 250 | - | - | |
| Bach9g01277 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 64 | 92 | IPR036236 | - | |
| Bach9g01277 | 305 | Pfam | Zinc finger, C2H2 type | 37 | 61 | IPR013087 | - | |
| Bach9g01277 | 305 | Pfam | Zinc finger, C2H2 type | 106 | 130 | IPR013087 | - | |
| Bach9g01277 | 305 | Pfam | Zinc finger, C2H2 type | 66 | 91 | IPR013087 | - | |
| Bach9g01277 | 305 | Gene3D | Classic Zinc Finger | 102 | 167 | - | - | |
| Bach9g01277 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 130 | IPR013087 | - | |
| Bach9g01277 | 305 | Gene3D | Classic Zinc Finger | 35 | 61 | - | - | |
| Bach9g01277 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 102 | 132 | IPR036236 | - | |
| Bach9g01277 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 33 | 63 | IPR036236 | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 91 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 227 | 253 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 37 | 66 | IPR013087 | - | |
| Bach9g01277 | 305 | PANTHER | ZINC FINGER PROTEIN | 18 | 292 | - | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 198 | 221 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 196 | 226 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 229 | 253 | IPR013087 | - | |
| Bach9g01277 | 305 | Gene3D | Classic Zinc Finger | 169 | 224 | - | - | |
| Bach9g01277 | 305 | Gene3D | Classic Zinc Finger | 62 | 101 | - | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 66 | 91 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 166 | 187 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 138 | 163 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 196 | 221 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 37 | 61 | IPR013087 | - | |
| Bach9g01277 | 305 | SMART | c2h2final6 | 227 | 253 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 96 | IPR013087 | - | |
| Bach9g01277 | 305 | Pfam | C2H2-type zinc finger | 196 | 221 | - | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 39 | 61 | IPR013087 | - | |
| Bach9g01277 | 305 | SUPERFAMILY | beta-beta-alpha zinc fingers | 178 | 235 | IPR036236 | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Bach9g01277 | 305 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 140 | 163 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach9g01277 | Bach-Chr9 | 10167884 | 10170778 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach9g01277 | 34 | 256 | C2H2 Transcription Factor Family | AT1G72050 | 52.000 | 2.69e-92 | 275 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Bach9g01277 | zf-C2H2 | 0.0048 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach9g01277 | K09191 | - | qsa:O6P43_029707 | 448.743 |