Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01249 ATGACCAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCTGCTAGGAAAGCAACATACAAAAAGAGGAAGAAGGGTCTAATGAAGAAGGTGAGTGAGCTGAGCACCCTTTGTGGGATTGAGGCATGTGCCATAATGTTCAGTCCCTATGATTCTCAGCCAGAGGTTTGGCCATCCCCATCTGGGGTCCTTAATGTGATTTCCAAGTTCAGGGACATGCCTGAATTGGAGCAGAGCAAGAAGATGATGAACCAAGAGGGGTTCCTGAAGCAAAGGGTCTTCAAGACCCAAGAGCAGGTCCAGAAACTCAGTGAGGAAAATCGTGGAAAGGAGATGACCCATGTCATGTTTCAGTATCTTGCTGCAGAGAAGGATCTGCAGAGTGTGAAGAATATGGGGCATTTGAGGGAGCTCGCATCAGTTATTGACCATAACCTGAAGGATATCACCATGAGGATGGAGGCACTGAAGAAGGAAACTCAAAGGCAGGGCCAAGGCCAAGGGCAGGTGAACATGGTTTCACAGCCAGAGAATGTTGCAGTGGAGGCAAAGGTAGAGCCAGAAGAGGGGCTGAATGTGAGTATTGAGGACACCATGCAAAGACAACAGTGGCTGATCAACATGATGAATTGTAATGGGGGTGGTAATAGGATGATGATGCCAGTTCCGAGTGTCAATCACCAAAACGCTGTATTCTATAACAATCCCTTTTTCAAGGGAAATGTTATGTGA 735 0.4667 MTRKKVKLAFIANDSARKATYKKRKKGLMKKVSELSTLCGIEACAIMFSPYDSQPEVWPSPSGVLNVISKFRDMPELEQSKKMMNQEGFLKQRVFKTQEQVQKLSEENRGKEMTHVMFQYLAAEKDLQSVKNMGHLRELASVIDHNLKDITMRMEALKKETQRQGQGQGQVNMVSQPENVAVEAKVEPEEGLNVSIEDTMQRQQWLINMMNCNGGGNRMMMPVPSVNHQNAVFYNNPFFKGNVM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01249 244 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bach9g01249 244 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bach9g01249 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach9g01249 244 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Bach9g01249 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Bach9g01249 244 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bach9g01249 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach9g01249 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach9g01249 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach9g01249 244 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Bach9g01249 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01249 Bach-Chr9 9942390 9943124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01249 1 167 Type I MADS-box Gene Family AT5G48670 55.689 3.94e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach9g01249 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01249 - - gmx:100813231 253.447