Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g01011 ATGACCAGAAGCAAGGTGAAGCTTGAATTCGTTGCTAATGAGTCAGCGAGGCGGGCTGCCTTCAGAAAGAGAAAGAAGGGTCTGCTGAAGAAGGTCGATGAACTGACCAAACTTTGCGGTGTTGAGGCCAGTGTTATCGTGTATGGCCCTAACGAGGCTTGGCCAGAGCTTTGGCCTTCTCCATTGGGGGTCCGTAGTGTGCTGGAGAGGTTCTGGGCAATGCCTGACATGGAACAGACCAGGAAAATGATGAACCAGGAGAGCTTCATCAGAGAGAGGATCGTGAAAACTTATGATCAGCTGAAGAAACTGATCCAGGACAATAAAGAGAAGCGACTGACCATTACTCTGTATGAGTATCTTTCCCAAGAGAAATTCATGAATAAACAGATAGGTTTGGCGGATTTGGGTGACATGGCAGCTATGCTTGACCGGAACCTGAAGAAAATTACTGGAAGGTTGGAGGCACTGAATAGGGCTGAGACTGAGATTGAGAGCCGAGCTCAAGTTGCTATCTGA 519 0.4798 MTRSKVKLEFVANESARRAAFRKRKKGLLKKVDELTKLCGVEASVIVYGPNEAWPELWPSPLGVRSVLERFWAMPDMEQTRKMMNQESFIRERIVKTYDQLKKLIQDNKEKRLTITLYEYLSQEKFMNKQIGLADLGDMAAMLDRNLKKITGRLEALNRAETEIESRAQVAI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g01011 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Bach9g01011 172 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bach9g01011 172 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Bach9g01011 172 Coils Coil 140 160 - -
Bach9g01011 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Bach9g01011 172 PANTHER MADS BOX PROTEIN 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g01011 Bach-Chr9 7589965 7590483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g01011 1 172 Type I MADS-box Gene Family AT5G48670 40.805 7.27e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach9g01011 SRF-TF 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g01011 - - gmx:100813231 176.407