Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g00983 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCGCCGTCGGGTTCGGATTCGGCCTCCTCCTCTCGCTCGAGGTCCTCCTCTCGCTCCAGCTCTCGCTCTCGTTCGCTTTCTCGGCCTCGGCCTCGGTCCCGGCCCCGTTCCCTTTCCAAGTCCCCATCCTCTTCGCGCTCTCTTTCCCGTTCCAGATCCTTGTCTTCGTCGTCTTCTCGGTCCCGCAGTGACAGTTCTCGTAGCCGGAGCCCCCGTCCTCTAACGAGAAGAACTCCTGCTGAAGCAATTAGGCGAGGACGGTCTCCCCTGCCCCAGTCTAAAAGGACTTCTCCACCACCAAGAAAACATTCTCCAGTTCGAGAATCAGTTGTTCTTCACATAGACAAGCTCAGCAGGAATGTCAATGAAGGCCATTTGAGAGAAATATTCAGTAACTTTGGTGAGGTTGTGAATGTGGAGCTGGTAATGGATCGAACTGTTAATCTTCCCAGAGGATATGGATATGTGGAATTTAAGACGAAAGCAGATGCTGAAAAAGCCTTATTATACATGGATGGTGGTCAAATAGATGGGAATATCATTAAGGCGAGATTTACTCTACCTCCGAGACAAAGGGTTTCACCACCCCCAAAGGCATCAGCTATTACTCCAAAGAGAGATGCCCCTAGAACTGATAATGTTAGTGCAGATGCTGAAAAGGATGGCCCAAAACGGCAAATGGAATCTTCTCCTCGAAGAAAACCTTCCTCACCACGAAGGAGATCTCCTGGTCCTCGAAGAGTTGGATCTCCAAGACGGCCAGATTCTCCTGTTCGTCCACGTCGTCGGTTGGACTCTCCATATCGTCGTGGAGAAACTCCTCCTAGGAGGAGGCCTTTGTCTCCTGCAAGAGGCCGTTCTCCATCTCCAGCTAGGCGCATGAGATCCCCTGCAAGAAGGTTCCGTGGAAATCCAGTTCGCAGACGCACGCCTCCAAGGCGCCGTTCCCCATTCAGACGGGCTCATAGTCCTCCTAGAAGGTCCCCTCTCAGTCGTAGACGCACTCGATCTCCAATACGTAGGCCTGCACGCTCACGTTCAAGATCCTTCTCACCACCACGAAGAGGTCGACCACCTGTAAGGCGTGGAAGCTCATCATCCTCCTCTGGTTCACCAAGTCCGCGCAAGATGACGCGAAGATCAAGGAGTCGCAGTCCAAAAAGGCCTTTGAGAAGAAGAGGCAGTAGCAATAGCAGCAGCAGCAGCTCACCACCCCCACCTCGCAGACCATAGACTATCTTGTACATCTGATCCGTCACTCTTTTCATCCTCATGTACTTAAAAGATTGTACCAGTTAGTGGATGTATTGTGATTGAGGAGGAGCTATGTTACCTCTTTTATTGT 1375 0.5185 MAKPGRGRRSPPSGSDSASSSRSRSSSRSSSRSRSLSRPRPRSRPRSLSKSPSSSRSLSRSRSLSSSSSRSRSDSSRSRSPRPLTRRTPAEAIRRGRSPLPQSKRTSPPPRKHSPVRESVVLHIDKLSRNVNEGHLREIFSNFGEVVNVELVMDRTVNLPRGYGYVEFKTKADAEKALLYMDGGQIDGNIIKARFTLPPRQRVSPPPKASAITPKRDAPRTDNVSADAEKDGPKRQMESSPRRKPSSPRRRSPGPRRVGSPRRPDSPVRPRRRLDSPYRRGETPPRRRPLSPARGRSPSPARRMRSPARRFRGNPVRRRTPPRRRSPFRRAHSPPRRSPLSRRRTRSPIRRPARSRSRSFSPPRRGRPPVRRGSSSSSSGSPSPRKMTRRSRSRSPKRPLRRRGSSNSSSSSSPPPPRRP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g00983 420 SMART rrm1_1 121 194 IPR000504 GO:0003723
Bach9g00983 420 MobiDBLite consensus disorder prediction 387 401 - -
Bach9g00983 420 CDD RRM_RNPS1 122 194 IPR034201 -
Bach9g00983 420 MobiDBLite consensus disorder prediction 303 361 - -
Bach9g00983 420 MobiDBLite consensus disorder prediction 1 118 - -
Bach9g00983 420 MobiDBLite consensus disorder prediction 220 245 - -
Bach9g00983 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Bach9g00983 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Bach9g00983 420 MobiDBLite consensus disorder prediction 262 289 - -
Bach9g00983 420 MobiDBLite consensus disorder prediction 197 420 - -
Bach9g00983 420 SUPERFAMILY RNA-binding domain, RBD 107 206 IPR035979 GO:0003676
Bach9g00983 420 MobiDBLite consensus disorder prediction 12 34 - -
Bach9g00983 420 MobiDBLite consensus disorder prediction 46 74 - -
Bach9g00983 420 MobiDBLite consensus disorder prediction 371 386 - -
Bach9g00983 420 FunFam Serine/arginine-rich splicing factor SR45 31 205 - -
Bach9g00983 420 Gene3D - 3 204 IPR012677 -
Bach9g00983 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 3 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g00983 Bach-Chr9 7328789 7332459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g00983 122 195 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.79e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g00983 K14325 - gmx:100783566 278.87