Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g00550 ATGGCAGAATCTGAGGAAACATCAAAATCTGCAGATAACCAACAAGCTGAGCAAGTGTGCAGTTTTTTCAGAAAGCCAGTTAATAAAAAGAATATCAGAAAACGTACAATTGACAATGAAGATGACGAGGAGGACTCTAAAAGTGAAAGTTCTTTGTTACACACTCAAAGAAAGACCTTAAAACCGGACAACAAATTATACTTTTCTACCGGTCCTTCTAAAAACTCTATGTCTACTGAACCTAGCCAACAATCTGAGAAAGCAGTGTTTCAGTTCGAGTCTTCAAAGGATATTCAAGTTGAACATGATAGCAAAGCAACGGCAACACTAGAAACTGAAACTGACTTTTCTAGAGATGCCCGAGCCATTCGTGAGAGAGCTCTAAAGCAAGCAGAGGAGAGTTTGAAGGGAAAAGGCAAAGATAGTGGAAATGAAAAATTGTATAAAGGCGTCCATGGTTACACAGATTACAAGGCCGGCTTTCGTAGAGAGCAAACAATTGCCAGTGAAAAGGCTGGTGGGGCGCATGGGCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGATACTGTGGGTATGGTGATGCATGCAAGTTTATGCATGACCGGGGTGATTACAAGTCTGGATGGCAGTTGGAGAAGGAATGGGATGAAGCAGAGAAAGCAAGAAAGAAGAGATTAGCTGCAGGAGAGGATCCAGACGAAGAGGATGCTGACTTGACAGATGAAGATGATGATGATGAAGTGCCATTTGCATGCTTCATTTGTAGGAAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCCAAGAACAAGAAGTGTTTTGTGTGTAACCAGCCTACTCTCGGCATTTTTAATACAGCTCATGAGATACGCAAGAGGATGGCTGCAGAGGGTAAATAA 990 0.4222 MAESEETSKSADNQQAEQVCSFFRKPVNKKNIRKRTIDNEDDEEDSKSESSLLHTQRKTLKPDNKLYFSTGPSKNSMSTEPSQQSEKAVFQFESSKDIQVEHDSKATATLETETDFSRDARAIRERALKQAEESLKGKGKDSGNEKLYKGVHGYTDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWDEAEKARKKRLAAGEDPDEEDADLTDEDDDDEVPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKRMAAEGK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g00550 329 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Bach9g00550 329 SUPERFAMILY RING/U-box 268 312 - -
Bach9g00550 329 PANTHER ZINC FINGER PROTEIN 183 13 327 IPR039971 -
Bach9g00550 329 MobiDBLite consensus disorder prediction 1 113 - -
Bach9g00550 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Bach9g00550 329 MobiDBLite consensus disorder prediction 240 260 - -
Bach9g00550 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Bach9g00550 329 Gene3D - 190 224 - -
Bach9g00550 329 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Bach9g00550 329 FunFam RING finger protein 113A 267 326 - -
Bach9g00550 329 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Bach9g00550 329 MobiDBLite consensus disorder prediction 32 61 - -
Bach9g00550 329 MobiDBLite consensus disorder prediction 7 21 - -
Bach9g00550 329 CDD RING-HC_RNF113A_B 265 315 - -
Bach9g00550 329 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Bach9g00550 329 MobiDBLite consensus disorder prediction 96 113 - -
Bach9g00550 329 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Bach9g00550 329 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Bach9g00550 329 SMART ring_2 269 306 IPR001841 -
Bach9g00550 329 MobiDBLite consensus disorder prediction 62 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g00550 Bach-Chr9 3884040 3885539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g00550 10 327 C2H2 Transcription Factor Family AT1G01350 71.384 1.13e-173 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bach9g00550 zf-C3HC4_3 8.6e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g00550 K13127 - gmx:100787434 539.65