Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g00080 ATGAACCCAGATATGTCATCCACGGATGCATCGTATTGGTGTTATAGCTGTACCCGGTTCGTTCGCCTTTTGGGTCAGGAACACATCGCTTGCCCCCACTGTGAAAGTGGCTTCATCGAAGAGATCGAAACCAACCCCTCCTCTGATGATAATCTTAGTCCGTTTCCAGCTTCCGCGTTTTCCATGTTCGGCGATAGCGCTCCAACATCCTATAACTTAAGGAGACATGGGTTCCGGAGAAGACGCCGCAACGCGGGCAGCCGGTCTCCCTTTAACCCTGTAATCGTTCTGCGTGGACCTGCTGAAGAGGACGGTGCTGATCATGAAAGAAGTAGCTTCGAATTGTACTATGACGATGGAGATGGCTCCGGTCTCCAGCCATTACCACCGACCATGTCGGAGTTTTTATTGGGATCAGGTTTCGATCGGTTGTTGGAACAGTTTTCCCAGATCGAAGTTAATGGGTTTGGGCGGCTGGAGAACCCGCCAGCGTCTAAAGCGGCCGTAGAATCAATGCCGACCATTGAGATTGTGGAAGACCACGTGGGTACCGATGCACACTGTGCCGTATGCAAGGAAGCGTTTGAACTGGGCTCGGAAGGTCGTGAAATGCCCTGTAAGCACATTTACCATTCGGACTGCATTCTTCCGTGGCTTTCTTTGCGCAATTCATGTCCCGTGTGCCGCCACCAACTGCCTTCGGATCAAAATTCATTGGAAAGTAGAATATCAGGGCCAATCGATGAAGAAACTGTGGGATTGACGATATGGAGGTTACCCGGTGGTGGATTTGCCGTTGGAAGGTTTTCCGGTGGTCGTAGAGCTGGTGAAAGCCATTTACCGGTTGTATATACAGAAATGGATGGCGGGATTAATACAAATGGGACTCCCAGAAGAATTTCCCGAGCCATGAGTGGCAGCAGAGTAAGCGAAAGTCGTGGGCTTGGCAGGATTTTCCGCAACTTGTTCTCCTTCTTTGGGAGGCGTCGGTCTAGGTCAATTTCTTCTTCGTCTTCGTCTTCAGTTGCTAGTTCCGAACAAGGGTCCATGAGTAGAGGCCATAGACAATCGAGTTTCGTGTTCAGCAGGAACTCGCGGAGGCGTGACAGAACTTGGGTCTTGGAAGATTGA 1131 0.5057 MNPDMSSTDASYWCYSCTRFVRLLGQEHIACPHCESGFIEEIETNPSSDDNLSPFPASAFSMFGDSAPTSYNLRRHGFRRRRRNAGSRSPFNPVIVLRGPAEEDGADHERSSFELYYDDGDGSGLQPLPPTMSEFLLGSGFDRLLEQFSQIEVNGFGRLENPPASKAAVESMPTIEIVEDHVGTDAHCAVCKEAFELGSEGREMPCKHIYHSDCILPWLSLRNSCPVCRHQLPSDQNSLESRISGPIDEETVGLTIWRLPGGGFAVGRFSGGRRAGESHLPVVYTEMDGGINTNGTPRRISRAMSGSRVSESRGLGRIFRNLFSFFGRRRSRSISSSSSSSVASSEQGSMSRGHRQSSFVFSRNSRRRDRTWVLED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g00080 376 Pfam Ring finger domain 187 229 IPR001841 -
Bach9g00080 376 MobiDBLite consensus disorder prediction 335 376 - -
Bach9g00080 376 SUPERFAMILY RING/U-box 168 235 - -
Bach9g00080 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 233 - -
Bach9g00080 376 SMART ring_2 188 228 IPR001841 -
Bach9g00080 376 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Bach9g00080 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Bach9g00080 376 MobiDBLite consensus disorder prediction 335 360 - -
Bach9g00080 376 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Bach9g00080 376 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Bach9g00080 376 MobiDBLite consensus disorder prediction 362 376 - -
Bach9g00080 376 CDD RING-H2_RNF126-like 188 229 - -
Bach9g00080 376 Pfam Protein of unknown function (DUF1117) 252 366 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g00080 Bach-Chr9 560328 561458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g00080 125 240 C3H Transcription Factor Family AT5G01980 43.103 7.96e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g00080 K11982 - vvi:100265659 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01393 13 17944696 17945826 Bach9g00080 9 560328 561458 BWGD