Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach9g00052 AGAAGGCGAGCCGAGAAATGAAATAGTGAACGAATGCGATAGAGGGAACGGAAGTGCAAGGAGGGCGCTTGGCGACGACGATGTCCTCCCAGCCCCAGGGATATCATCATCCTTCATCCATTGAGGAAGTCCGAACCCTTTGGATTGGGGATTTGCAGTACTCGGTTGACGAAGCCTACCTTAATCACTGCTTTGCTCACACCGGCGAGGTAGTTTCCATAAAGATTATACGGAACAAGATCACTGGACAACCCGAGGGCTATGGGTTTGTGGAGTTTGTTTCACATGCAGCAGCAGAAAGGATTCTGCAGACTTACAATGGGACTCAAATGCCAGGAACGGAACAAACTTTCAGGCTGAATTGGGCTTCTTTTGGTATTGGGGAACGGCGTCCTGATGCTGGGCCTGAGAACTCAATTTTTGTGGGGGATTTGGCACCTGATGTAACAGATTACCTATTGCAGGAGACATTTCGAGCCCATTATCCTTCAGTTAGAGGCGCCAAAGTTGTGACTGATCCTAATACAGGGCGCTCCAACGGATGTGGGTTTGTTAAATTTTTTGATGAGGCAGAAAGAACCGTTCTATGACTGAAATGAACGGAATGTATTGCTCAACGAGGCCAATGTGTATCAGTGCTGCAACACCCAAAAAGACCACTGGTTTTCAACAGCAATATGTTGCTGCCAAAGCACAAGATAGAAGAGAAACTTACCCATGGATCTTTTCTGCAGTAATATATCCAATCCAAGCATATACTACCCCAGTGAATACAGTTCCACCAGATTATGATACAAATAATACCACTATTTTTGTTGGTAATTTGGATATCAATGTCAATGAAGAGGAGCTGAAGCAAACTTTTTTGCAGTTCGGAGAAATTGTCTCTGTCAAGATTCATGCTGGAAAGGGATATGGTTTTGTTCAATTTGGGACCAGAACATCTGCCGAAGAAGCCATTCTGAAGATGCAAAGAAAGGTGATAGGTCAACAAGTGGTCCGAATTGCTTGGGGAAGGAGCTCAACAGCTAGACAGGACTTACCTGGTAGCTGGGGGCCTCAGATTGATCCAAGTCAATGGAGTGTGTACTATGGGTATGGACAAGGGTATGAGGCCTTTGCTTATGGGGCTATGCATGATCCTTCTGCATATGCGTACGGTGCATATGCTGGTTACGCACAGTATCCTCAACAGGTTGAAGGTGCTCAGGACATGGCAGCTAAGGCAATGCATCCCAAAAGGGAGTTGTATGATCCTCTGGCTATGCCTGAAGTGGATAAGTTAAATGCTGCGTTCCTCTCAGTCCTTGGAACTGCTATTTTATGGAGGTCTCTCTGGCAGAAAACCTCGCCATTCTTACAGCAAGCTCAGTATATATTTGTATTACAACCACTTCAATTTTGCGTGCTAGAGTAAGCAGGCCCAGGTTTAGGTTCTGCACGTAGTCAGTTTACATTTGTGGGGAAAATTTAACCCATCATATTTTTCTCGGAAAAGAAAAAGAGGCTATAATAGGGAGAACAAGCGAAAGCCAACTAAGCGCCAAGGGCAACAAAAACTAGGTGAAGTTTGAATCACTGCAGCCCCATGGGTACACCAAAATCCCAGTTAGGGAGGATTCAGGCTCAAGCAATAAAAAATGAAATGAAATGCTTATAAACCCCACTATGATACGGGGTTTGATGTGTTACACGAGTTACCATTTTCTCAATATCACATTTTATTCATTGTAAAAGAAATTAGTTATTTTATTTTTTTAAGTTTAGTAGGTCATAGTCTTTAATTTGCTACTATTGTATTGGGTATCCACTGATTTCAATTGAATAAAATCACACCCTTTTGGA 1845 0.4336 MCISAATPKKTTGFQQQYVAAKAQDRRETYPWIFSAVIYPIQAYTTPVNTVPPDYDTNNTTIFVGNLDINVNEEELKQTFLQFGEIVSVKIHAGKGYGFVQFGTRTSAEEAILKMQRKVIGQQVVRIAWGRSSTARQDLPGSWGPQIDPSQWSVYYGYGQGYEAFAYGAMHDPSAYAYGAYAGYAQYPQQVEGAQDMAAKAMHPKRELYDPLAMPEVDKLNAAFLSVLGTAILWRSLWQKTSPFLQQAQYIFVLQPLQFCVLE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach9g00052 263 PANTHER RNA PROCESSING PROTEIN LD23810P 54 138 - -
Bach9g00052 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 132 IPR000504 GO:0003723
Bach9g00052 263 Gene3D - 45 140 IPR012677 -
Bach9g00052 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 125 IPR000504 GO:0003723
Bach9g00052 263 SMART rrm1_1 61 128 IPR000504 GO:0003723
Bach9g00052 263 FunFam polyadenylate-binding protein RBP45 43 139 - -
Bach9g00052 263 SUPERFAMILY RNA-binding domain, RBD 38 160 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach9g00052 Bach-Chr9 402353 406502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach9g00052 61 137 Eukaryotic Initiation Factors Gene Family AT2G23350 30.488 2.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach9g00052 - - lja:Lj3g3v1684640.1 335.109