LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach9g00027	ATGAAATTCTCAGTTAGACATTTGTTCGTTTCACCCCTGAATGTGAAGCCATGGACTGCTGGGTTACTAATTGAAGTTGCGATTTTATCATATTTATGGTCGTCAGTATTGGGTCTTGGTTCCATGTCTTCCATAGCCATTTCTTATGGTGAAAAAGGTTCTGTCTTTTGTGGTTTAAAATCAGATGGGTCTCATACTGTGACCTGTTACGGATCAAACTCAGCCATAATATTTGGAACGCCAACCCGTTTATCATTTCTGGGTCTAACCGCTGGTGACGGCTTTGTCTGTGGGCTTCTAATGGATTCGAGCCAGCCTTATTGCTGGGGTAGCAGTAATTATGTTGAAATGGGTGTTCCACAACCTATGATTAAAGGAGCTGAGTACCTAGAAATCAGTGCTGGAGATTACCATGTTTGTGGGTTGAGGAAACCTTTGACGGGAAGATTGAGAAACACCTCTTTTGTTGATTGCTGGGGTTACAACATGACTAAGAACTACGTGTTCGATGGGCAGATTCAATCAATCTCGGCAGGTTCTGAATTCAATTGTGGGTTGTTTTCTCAGAATAGGACTGTCTTCTGTTGGGGTGACGAGACCAGCTGCCGATTAATTAATTATGTTCAAAAAAACAAGAGATTCCAGAAGATTTGTGCCGGTGGGTATCATGTTTGTGGAATTTTAGAAGGGGTAAATTCTAAGACTGTTTGTTGGGGAAGGAGCTTGGATACTGATGAACAAATCTCGGTGGCATATTCAGGTCAAGGGAACGTTCACTTGGCTCCAAATGATCCAATGCTCTCTGTTGTTGGAGGAAGATTCCATGCTTGTGGCATTAAGAGCTATGATCGTGGAGTCATTTGTTGGGGTTTTGTTGTCAAAGCAAGCACCCCAACTCCCAGTGATATTAAACTCTTTGAGATTGCTGCTGGAAATTATTTCACTTGTGGAATTCTTGCTGAGAAATCCCTTTTGCCCGTTTGTTGGGGTGTTAACTTCCCTACCACTCTCCCATTAGCTGTCTCGCCGGGACTGTGCAGGCCTACTCCGTGCCCACCTGGTTTCTACGAGAATGCCCAGCACAAGGGTCTTTGTAAGTCCCCTGATTCTCGAGTTTGCATGCCCTGCACTCTTGCTTGTCCACCTCAGATGTATCAGACCAGTGGATGCAATTTGACTTCTGACACAGTTTGTGAATATAACTGTTCAACTTGTTCCTCCCAAGAATGCTTCTCATATTGCTCTTCTTCATATTCTAATTATAATGCCATGATGGGGAAGAAAAGTGAAAAACTTTGGTCTCTGCAGTTGCCCGTTGTTATTGCAGAGATTGGTTTTGCGGTTTTCTTAGTGAGCATTGTATCTCTAACTGCAGTTTTGTATGTTCGCTACAAGTTACGAGATTGTCAGTGTTCAGTGAACGGTTCAAAGGTTAAGAGAATCAATGGAAGCGCTAATTCTGTTCATAATGAGAACAGCAAAATCCGGCCAGACTTGGAGGAGATCAAGATTAGGAGGGCTCAAATGTTCAGCTATGAAGAACTTGAAAGGGCAACAGGTGGGTTTAAAGAAGAATCCGTTGTAGGGAAGGGAAGCTTTTCGTGTGTATTCAAGGGGGTTTTGAAAGATGGTACTGTTGTTGCTGTTAAAAGGGCCATAATGTCTCCCAACATGCACAAGAATTCCAAAGAGTTTCACACAGAGCTAGACTTGCTCTCTAGATTGAACCATGCGCATTTACTCAACCTACTAGGCTATTGTGAAGAAGGCGGAGAAAGGCTTCTTGTTTATGAGTTCATGGCTCACGGTTCTCTGCATCAGCACCTTCATGGAAAAAGCAAGGTGTTGAAAGAGCAGTTGGATTGGGTTCGAAGGGTGACAATTGCAGTTCAAGCAGCTCGTGGAATTGAATATTTGCATGGTTACGCTTGCCCACCTGTGATTCACCGGGACATTAAGTCTTCAAACATTCTGATCGATGAAGAGCACAATGCTCGAGTAGCTGATTTTGGCTTGTCATTGTTGGGTCCAGCAGATAGTGGCTCCCCCTTGGCTGAGCTACCAGCTGGGACTCTTGGCTATCTTGATCCGGAATACTATAGGCTTCATTACCTGACCACCAAATCTGATGTCTACAGCTTCGGTGTTCTGCTATTGGAAATTCTTACTGGAAGAAAAGCCATTGACATGCAATATGAAGAAGGGAATATTGTCCAATGGGCAGTGCCACTGATCAAGACAGGCGATATAACTGCAATTTTGGACCCCGTTTTGAAACCACCAGCTGATCTTGAAGCCTTGAAAAGAATTGCCAATGTAGCATGTAAATGTGTGAGAATGAGAGGCAAGGAGAGGCCCTCAATGGACAAAGTGACAACTGCTTTAGAGCGAGCTCTTGCACAACTAATGGGTAGTCCATGCAACGAGCAGCCCATTTTACCCACTGAGGTGGTTTTGGGAAGTAACAGATTGCACAAGAAATCGTCTCAAAGATCTTCAAACAGGTCAGTTTCGGAAACGGATGTGGCAGAAACTGAGGATCAAAGGTTTGAGTTCAGAGCACCCTCATGGATAACTTTCCCAAGTGTTACTTCTTCTCAGAGAAGAAAGTCATCAGTGTCAGAAGCAGACGTTGAGGGGAAAAATTCAGAGATGAAGAACCTGGGCAATATTGTTGGAGGTGGTGGTGGTGATGTTTTAAGGAGTCTAGAAGAAGAGATTGGACCTGCTTCTCCTCAGGAGAGGCTCTTCTTGCAGCACAACTTCTAA	2769	0.4391	MKFSVRHLFVSPLNVKPWTAGLLIEVAILSYLWSSVLGLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGSNSAIIFGTPTRLSFLGLTAGDGFVCGLLMDSSQPYCWGSSNYVEMGVPQPMIKGAEYLEISAGDYHVCGLRKPLTGRLRNTSFVDCWGYNMTKNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDETSCRLINYVQKNKRFQKICAGGYHVCGILEGVNSKTVCWGRSLDTDEQISVAYSGQGNVHLAPNDPMLSVVGGRFHACGIKSYDRGVICWGFVVKASTPTPSDIKLFEIAAGNYFTCGILAEKSLLPVCWGVNFPTTLPLAVSPGLCRPTPCPPGFYENAQHKGLCKSPDSRVCMPCTLACPPQMYQTSGCNLTSDTVCEYNCSTCSSQECFSYCSSSYSNYNAMMGKKSEKLWSLQLPVVIAEIGFAVFLVSIVSLTAVLYVRYKLRDCQCSVNGSKVKRINGSANSVHNENSKIRPDLEEIKIRRAQMFSYEELERATGGFKEESVVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMHKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKSKVLKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILTGRKAIDMQYEEGNIVQWAVPLIKTGDITAILDPVLKPPADLEALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSNRLHKKSSQRSSNRSVSETDVAETEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVEGKNSEMKNLGNIVGGGGGDVLRSLEEEIGPASPQERLFLQHNF	922

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach9g00027	922	SMART	serkin_6	522	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach9g00027	922	SUPERFAMILY	Protein kinase-like (PK-like)	501	795	IPR011009	-
	Bach9g00027	922	SUPERFAMILY	RCC1/BLIP-II	39	291	IPR009091	-
	Bach9g00027	922	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	647	659	IPR008271	GO:0004672\|GO:0006468
	Bach9g00027	922	Gene3D	-	85	344	IPR009091	-
	Bach9g00027	922	FunFam	Receptor protein kinase CRINKLY4	600	802	-	-
	Bach9g00027	922	MobiDBLite	consensus disorder prediction	823	846	-	-
	Bach9g00027	922	Gene3D	Transferase(Phosphotransferase) domain 1	600	807	-	-
	Bach9g00027	922	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	26	922	-	-
	Bach9g00027	922	Pfam	Protein tyrosine and serine/threonine kinase	525	794	IPR001245	GO:0004672\|GO:0006468
	Bach9g00027	922	FunFam	serine/threonine-protein kinase-like protein CCR1	492	599	-	-
	Bach9g00027	922	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	350	398	IPR001368	GO:0005515
	Bach9g00027	922	Gene3D	Phosphorylase Kinase; domain 1	493	599	-	-
	Bach9g00027	922	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	104	145	IPR000408	-
	Bach9g00027	922	ProSiteProfiles	Protein kinase domain profile.	522	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach9g00027	922	ProSitePatterns	Protein kinases ATP-binding region signature.	528	550	IPR017441	GO:0005524
	Bach9g00027	922	MobiDBLite	consensus disorder prediction	823	839	-	-
	Bach9g00027	922	FunFam	Serine/threonine-protein kinase-like protein CR4	38	205	-	-
	Bach9g00027	922	MobiDBLite	consensus disorder prediction	864	893	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach9g00027	Bach-Chr9	201725	204493	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach9g00027	22	922	Receptor kinase-like Gene Family	AT3G59420	67.731	0.0	1255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Bach9g00027		PK_Tyr_Ser-Thr	8.4e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach9g00027	-		-	qsa:O6P43_028109	1531.15