LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g02779	TATCAACACACAATCTACAGCTTCGCTAGCTCATTGCTTTTTCTCTTCGCAGAGAGACTTTGTCCTTGATTTTTAGGTTCCCATTATGAACTGTCTTCAGAATCTTTCTCGATCCTCTACTTTTCCCTTCCAAGGTTTCAGATGCTACCAAAGGAAGCCTCCTCCATCTGCTAATTCACTGGGTATTATCAGTGCTTCTAATCAGACTTATCTAAATCTAAGTATGACAGTGAAGTCTGCTTCTGGTTCTATGTCCAGTGCAGAGACAAGTAGTGCCAATATGAAGGAGGAGAAGTCTGAGACATACAGTCATGACATGACTGAAGCCATGGGTGCTGTCTTGACCTATAGGCATGAATTGGGAATGAACTACAACTTTATCCGTCCAGACTTAATTGTTGGATCATGCTTACAGACTCCTGAAGATGTTGACAAGCTATGCAGAATAGGAGTAAAAACAATCTTTTGCTTGCAACAAGACCCTGATCTAGAATATTTTGGAGTTGATATCAATGCCATACAAGAGTATGCAAAGGCATGCAAGGACATTCAACACTTGCGTGCTCAAATAAGGGACTTTGATGCATTTGATTTAAGGAGGCGGCTTCCAGCTGTTGTTAGCAAGTTATACAAGGCAATAAATTGCAATGGGGGAATCACATATGTACATTGCACTGCTGGACTTGGAAGAGCTCCGGCTGTTGCGTTAGCATATATGTTTTGGGTTCAGGGTTATAAATTTAATGAAGCTCATAGACTGCTTCAGAGCAAACGGTCGTGTTTCCCAAAATTGGATGCCATAAAAAGTGCAACAGCTGATATTCTTACAGGCTTCAGTAAAAAGCTTGTTACTTTGAAATGGGAAGACAACAATTGCACTACAGTGGAAATTTCTGGACTTGATATTGGATGGGGCCAGAGAATGCCTCTAAGTTTTGATGACAAACGAAGTTTGTGGCTTCTCGAGAGGGAATTGCCTGAAGGAAGCTATGAGTACAAGTACATTGTTGATGGGGAATGGACTGTCAATAAGGATGAAGATGTGACCTCTCCAAACAAAGATGGCCATGTCAATAATTTCATTGAGGTCCTGGAAGATCCCAGCAGTGTTCGTGCTTCCCTTAGTAAGAGATTGATCGGTGATGATCCTGATCTCACAGAAGATGAACGGCTGAGAATAAGAAAGTTTCTTGAAGAGTGCCCTGATGACGAACAATAAATTAGGAATGCACCTACTTGTTTATACGTAAATAATTGCACATATAATGTCATAATAATCTACTTAGAAATGAGAAGACCATGCTGCAACAGTGATT	1316	0.4065	MNCLQNLSRSSTFPFQGFRCYQRKPPPSANSLGIISASNQTYLNLSMTVKSASGSMSSAETSSANMKEEKSETYSHDMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLCRIGVKTIFCLQQDPDLEYFGVDINAIQEYAKACKDIQHLRAQIRDFDAFDLRRRLPAVVSKLYKAINCNGGITYVHCTAGLGRAPAVALAYMFWVQGYKFNEAHRLLQSKRSCFPKLDAIKSATADILTGFSKKLVTLKWEDNNCTTVEISGLDIGWGQRMPLSFDDKRSLWLLERELPEGSYEYKYIVDGEWTVNKDEDVTSPNKDGHVNNFIEVLEDPSSVRASLSKRLIGDDPDLTEDERLRIRKFLEECPDDEQ	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g02779	377	CDD	E_set_AMPKbeta_like_N	255	335	-	-
	Bach8g02779	377	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	92	237	IPR029021	-
	Bach8g02779	377	Pfam	Glycogen recognition site of AMP-activated protein kinase	255	338	IPR032640	-
	Bach8g02779	377	CDD	DSP_laforin-like	94	241	IPR045204	GO:0019203
	Bach8g02779	377	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	88	272	-	-
	Bach8g02779	377	Pfam	Dual specificity phosphatase, catalytic domain	138	233	IPR000340	GO:0008138\|GO:0016311
	Bach8g02779	377	Gene3D	Immunoglobulins	250	340	IPR013783	-
	Bach8g02779	377	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	172	230	IPR000387	GO:0016311\|GO:0016791
	Bach8g02779	377	Gene3D	Protein tyrosine phosphatase superfamily	88	368	IPR029021	-
	Bach8g02779	377	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	95	252	IPR020422	GO:0006470\|GO:0008138
	Bach8g02779	377	SMART	dsp_5	95	245	IPR020422	GO:0006470\|GO:0008138
	Bach8g02779	377	MobiDBLite	consensus disorder prediction	54	74	-	-
	Bach8g02779	377	SUPERFAMILY	E set domains	253	335	IPR014756	-
	Bach8g02779	377	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	3	375	-	-
	Bach8g02779	377	FunFam	Phosphoglucan phosphatase DSP4, chloroplastic	250	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g02779	Bach-Chr8	34432630	34437509	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g02779	94	376	Protein tyrosine phosphatase (PTP) family	AT3G52180	69.258	2.34e-151	427

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g02779	-		-	gmx:100804010	590.497