Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g02682 TTAACTTTGAGCTTAGACAACAAGATCGAATCGCCAAGGTTCCCTCGGCAATAAAGCCAATCACTTTCTTCACTTGTTTCCCCTCTCCTCACAGAGACAGGCGAAGGATTTCAATTAAATAATTGCCAAGTCCGCACTCGGCAGCTATTGCAGCAGCAACAGTAATAGCACGAGCATGCTGAGGAAGAAGAAGATGGAGCAGCGCTTCACCTTCTTCTTCTCCTGTTGATTTCATGGCCTCCTCTCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCTACAGAGGAGCAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTTTCATTCAGATTAGTTATCGATAGAGAAACTGGGAAGCCAAAGGGTTATGGTTTCTGTGAGTATAAGGATGAAGAGACAGCTCTAAGTGCTCGTCGTAACCTTCAAGGTTATCAAATCAATGGGCGGCAGTTACGTGTTGATTTTGCTGAAAATGATAAAGGTGCTGATAGAAATCGAGAACAGGGACGTGGTGGGCCTGGGCTAGCAGCAAATGCTGACCCTCAGAAACAAGTAGGTGGACCAGCTGCCCATGGAGAGGCTGTTCACCATCAGCCTATTGGTCTTCATATTGCCATCACTGCTGCATCTGTCATGGCAGCAGCTTTAGGTGGTGCTCAGTCTGGCATCCAGTCAAATCAAAATGGTTTGCAAAGTCAGTCAGCATTAGCACATGATCCTTTAACTCTGCATCTGGCTAAAATGTCCAGGAGTCAGCTGAATGATATTGTCTCTGAGCTAAAGGCAATGGCTACACAACACAAGGAACTAGCTCGCCAGCTGTTACTTTCACGACCACAGTTATCCAAGGCCCTTTTTCAGGCACAAATAATGCTAGGAATGGTGACCCCACAAGTGTTACAAATGCCAAATCTTAGTCAGGTTGCAGGTCAAACCTCACAGCCTCCAGTGAATGAAGGTCAGCTAGGTCAGCATTCAGCATTTCCAGGGCTTCCTCATCCACAAAGCAAGTTGCAGTCTGGCATGATCCCCAACATTCAAGAAGCTCAACTCAATACCATAGCTCATAATCCTTTGGTTCCTAATCAATTTAGTGCACATCCAAAGCCACCTTTGCAACCTCGGATTCAGCTTCCACAACATCCAAGCAACCTTGTTGTACAGCAGAGCACATTACCGGGGCAATCTAATTTAACACTTCCTTCAATGCGCCCTCAATCTATGGCAAGTTTGTCTGTTAGACCACCAAATCAGCTGCCAATTTCTACTACTTTGAACCAACAAATGCAATCTTCTATACTAAAGCATTCAGGACATGTTGGAAACCCAATTGCAGCACATAATATTCAGACGGTTCGTCCAGATGCAAGCTTTCAGCCTGGCCCCTCCATATCAGCAGGTATTTCTCAGCCAATTAGTAACGAAGATGATAGATCAGCCAAAGCTCTTGAACATTCAAATTGGGCCAAGCGTAGTACTTATCAAAACATGCCTTTGATATCATTAGAGAAGACAAATGTAGTCCAAGATTCTTCAGAACCATTTAGTCGCCCTGCTAAGCTGATGAAATTGGATGAAGGAAGGAGCACCTCTCTTTCTGCTGGGCTCACAGGTGTGCCTGCCAACAATGGATCATCCCAAGGTCTTGGAAGTAGCTTGTTGCCGGCAAATGCAAATCCTAAAACAGAAGTGCAGTATTCTGAGCAAAAACAATCTTCTCAGTCCCAGCTCCCACCTGATGTGGAGTCTATTTTACTGCAACAAGTGTTGAATCTAACCCCGGAGCAGTTGAGCTCTTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGCCGTGATCAGATCCAGTCCTAATAGCAGAGACAGAAACTCATAAACAGGTCAAAGATCACAGCAATCCATTTCCAGGAAAGTGTTCTGTTAGCCTAACCTTTCAACTTCCAGGAGCCTGTTTGTATATTATCATTACTGTAGATTAGGAATCAGATAATCAAAATTTTGTGAGCATTATAGCATTCATGTAGTATTTCCCCCCCTATGTTCTTCCCCAAACATCTTTTGTAACACTTAGGAGCTCTACATAGGGCATACATAGAAATCTTTAGAAGAGAGACTCTGTACAATAATCTTTTTGTCCATGAGAAATTTGTCTCTTCCCTTGTTATGTGTTTGTTGCTGAACATCTTGGATTTGTCATTTGTACTAAGTGCATTTGCAGAAATACATTGCGTCTGTACACCAAAAAAATAAAAAGAAATATATTGCCTCTTGAACCA 2305 0.4382 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYQINGRQLRVDFAENDKGADRNREQGRGGPGLAANADPQKQVGGPAAHGEAVHHQPIGLHIAITAASVMAAALGGAQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLNDIVSELKAMATQHKELARQLLLSRPQLSKALFQAQIMLGMVTPQVLQMPNLSQVAGQTSQPPVNEGQLGQHSAFPGLPHPQSKLQSGMIPNIQEAQLNTIAHNPLVPNQFSAHPKPPLQPRIQLPQHPSNLVVQQSTLPGQSNLTLPSMRPQSMASLSVRPPNQLPISTTLNQQMQSSILKHSGHVGNPIAAHNIQTVRPDASFQPGPSISAGISQPISNEDDRSAKALEHSNWAKRSTYQNMPLISLEKTNVVQDSSEPFSRPAKLMKLDEGRSTSLSAGLTGVPANNGSSQGLGSSLLPANANPKTEVQYSEQKQSSQSQLPPDVESILLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQIQS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g02682 549 Gene3D - 1 117 IPR012677 -
Bach8g02682 549 MobiDBLite consensus disorder prediction 459 505 - -
Bach8g02682 549 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 546 - -
Bach8g02682 549 Pfam Transcription termination and cleavage factor C-terminal 512 544 IPR026896 GO:0031124
Bach8g02682 549 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 228 IPR025742 -
Bach8g02682 549 MobiDBLite consensus disorder prediction 381 403 - -
Bach8g02682 549 MobiDBLite consensus disorder prediction 381 408 - -
Bach8g02682 549 FunFam Related to Cleavage stimulation factor 503 545 - -
Bach8g02682 549 FunFam Cleavage stimulating factor 64 1 116 - -
Bach8g02682 549 MobiDBLite consensus disorder prediction 82 120 - -
Bach8g02682 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Bach8g02682 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bach8g02682 549 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Bach8g02682 549 Gene3D - 148 230 - -
Bach8g02682 549 FunFam Cleavage stimulating factor 64 155 230 - -
Bach8g02682 549 CDD RRM_CSTF2_RNA15_like 7 83 - -
Bach8g02682 549 Gene3D - 505 546 IPR038192 -
Bach8g02682 549 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g02682 Bach-Chr8 33566459 33574209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g02682 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.62e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g02682 K14407 - gmx:100806489 722.62