Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g02427 ATGAAGATTAAGGTGAAGACTCTCAACGGCACTCACTTTGAGATCGAAGTGAAACCAGAAGATACGGTTGCTGACGTGAAGGAAAAGATAGAGACAACACATGTTAAAGATGCTTACCCAGCTGCACAACAAGTGCTTATTCATCAGGGAAAAGTGCTTAAGGATGGCATGACCTTGGAAGAAAACAACATTGCTGAAAATAGTTTTCTGGTGATCATGTTAGCCAAGGTTAAAGCATCCATAAGTGGATCCTCAACTACCTCATCTGCTCCAACAAACCAGGTAGTCCAACCTGCAAGTTCTTTGCCTCCAACTTTAATTCCGCCTTCAATTACTTCTCAACCTCCTGCTTCAACTGCAGTACATAGACTATCCAATCCAGAGCAAACACCTGCTGCAGCTGCTGCCATTTTTTCAGATTCCAGTATCTATGACCAAGCTGCATCGAGGGAAGGACATGGTTTAGAGTCCACAATCCAACAGATTCTTGACATTGGTGGAGGAAGTTGGGATCGGGATACTGTAATCCGTGCTCTGCGTGCTGCATTTAACAATCCTGAAAGAGCTATTGAGTATCTCTATTCTGTAATTCCTGAACAAGCTGACGTTCCAGCAGTTGCCAGAGACCCTGCCGTGGGGCAGGTGGCAGATCCTCCAGTCCAGGCTCCACAACCAGCGGTTCCTGCTAGTGGGCCCAATGCTGACCCACTAAACCTGTTTCCTCAGGGCGTTCCCAATATTGGTACTCATCTTGATACTGCAAACTTGGATTTCTTGCGTAACGGCCAACAGTTCAAAACCGTGAGAGCTATGGTGCAAGCAAACTCCCCTATTTTACAGTCCATGCTTCAGGAACTTCGAGAACAGGATCCAAAGCTAATGCGATTGGTCGAAGAGAATCAATCTGACTTGTTAAGCCTTATAAATGAGCCCATTGAAGGAAAAGAGGACCCAGGGGCTGCAATGCCTGAGTCCATCATTCTCACCCCTGAAGAGGTTGAAGCCATTCAACGGGTGAGCTACCGTCAACTCTCTGCATTCAGTTACCTAGACTCTGGTCTTTCTTTCATTGCTATTCGTCAGTTATTTGCTGGATTAACGTCCAATTAA 1110 0.4577 MKIKVKTLNGTHFEIEVKPEDTVADVKEKIETTHVKDAYPAAQQVLIHQGKVLKDGMTLEENNIAENSFLVIMLAKVKASISGSSTTSSAPTNQVVQPASSLPPTLIPPSITSQPPASTAVHRLSNPEQTPAAAAAIFSDSSIYDQAASREGHGLESTIQQILDIGGGSWDRDTVIRALRAAFNNPERAIEYLYSVIPEQADVPAVARDPAVGQVADPPVQAPQPAVPASGPNADPLNLFPQGVPNIGTHLDTANLDFLRNGQQFKTVRAMVQANSPILQSMLQELREQDPKLMRLVEENQSDLLSLINEPIEGKEDPGAAMPESIILTPEEVEAIQRVSYRQLSAFSYLDSGLSFIAIRQLFAGLTSN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g02427 369 Pfam UBA/TS-N domain 156 193 IPR015940 -
Bach8g02427 369 SUPERFAMILY Ubiquitin-like 1 92 IPR029071 -
Bach8g02427 369 FunFam UV excision repair protein RAD23 1 80 - -
Bach8g02427 369 Pfam Ubiquitin family 3 75 IPR000626 GO:0005515
Bach8g02427 369 PRINTS DNA repair protein Rad23 signature 282 304 IPR004806 GO:0006289
Bach8g02427 369 PRINTS DNA repair protein Rad23 signature 326 342 IPR004806 GO:0006289
Bach8g02427 369 Gene3D - 250 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach8g02427 369 Pfam XPC-binding domain 256 311 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bach8g02427 369 Gene3D - 151 198 - -
Bach8g02427 369 NCBIfam UV excision repair protein Rad23 1 339 IPR004806 GO:0006289
Bach8g02427 369 FunFam UV excision repair protein RAD23 homolog 149 198 - -
Bach8g02427 369 SUPERFAMILY XPC-binding domain 254 318 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach8g02427 369 Gene3D - 1 80 - -
Bach8g02427 369 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bach8g02427 369 SUPERFAMILY UBA-like 149 203 IPR009060 GO:0005515
Bach8g02427 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 196 IPR015940 -
Bach8g02427 369 SMART uba_6 155 195 IPR015940 -
Bach8g02427 369 CDD Ubl_Rad23 1 74 - -
Bach8g02427 369 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 340 - -
Bach8g02427 369 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g02427 Bach-Chr8 29780298 29784820 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g02427 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 44.595 3.99e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g02427 K10839 - qsu:112025848 383.259