Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach8g02390 | ATGGCTGATATCGATTACCATGCAAAACCTAACCCTACCACCACCACAGCTCTGAAGCTCTTTGGCATTAACATTCACAATGCTTCCGAAGATCACAGCAATGTAGACTCTAACAAATCTCCATCTGGGTCACCGGAATCGGAGCCTTTGAACTCCGGCGAAGCCCGTAAGTATGAGTGCCAGTATTGTTTCCGGGGGTTTGCAAATTCACAAGCACTTGGTGGGCATCAGAACGCGCATAAGAAAGAAAGACAGCTCCTAAAGCGTGCCCAAATGCAAGCTGCTCTTGGCTTTGCTGCTCCACATATACCAAACCCAATCATATCAGGGTTCTCACCGCCATCACGCCTCCTAGCCGGAGCGCCACCACCGCCACGGCAGTCATCTTCAAGGCTATATGGAAGTACTCCCCCTGCTTTTGGCGTATTTCATTCAGGGACCTTTGCAGCGCCAGGTAGACGCGTATATGCCACTGGTGGTTATGGAGGGTCAGCTGCAATGACTTTACCTGATGCCGGAGCCCAGCCGATACCGGTAGCCGGTGGTTTCGGTGGTGGGGATGGAGGTGGCGAACAAGGCTTCGGTTTGGATTTGCATCTTAGTCTATAA | 609 | 0.5156 | MADIDYHAKPNPTTTTALKLFGINIHNASEDHSNVDSNKSPSGSPESEPLNSGEARKYECQYCFRGFANSQALGGHQNAHKKERQLLKRAQMQAALGFAAPHIPNPIISGFSPPSRLLAGAPPPPRQSSSRLYGSTPPAFGVFHSGTFAAPGRRVYATGGYGGSAAMTLPDAGAQPIPVAGGFGGGDGGGEQGFGLDLHLSL | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach8g02390 | 202 | MobiDBLite | consensus disorder prediction | 114 | 133 | - | - | |
| Bach8g02390 | 202 | MobiDBLite | consensus disorder prediction | 29 | 49 | - | - | |
| Bach8g02390 | 202 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
| Bach8g02390 | 202 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - | |
| Bach8g02390 | 202 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 85 | IPR013087 | - | |
| Bach8g02390 | 202 | PANTHER | ZINC FINGER PROTEIN 5 | 11 | 202 | IPR044299 | GO:0010090 | |
| Bach8g02390 | 202 | Gene3D | Classic Zinc Finger | 46 | 97 | - | - | |
| Bach8g02390 | 202 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 85 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach8g02390 | Bach-Chr8 | 28930046 | 28930654 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach8g02390 | 13 | 202 | C2H2 Transcription Factor Family | AT1G67030 | 42.453 | 1.08e-32 | 115 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Bach8g02390 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach8g02390 | - | - | jre:108984293 | 176.792 |