Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g02239 GGACAATTAGCTAGGGTGGAGCATCTATCTTCTAAGTGAAGTTGATGACATATTAAGTTCTTGGGCTATCACTGTATTGGAGCAAATGTCCTTCCGCAGTATAGTTCGAGATGTAAGAGATGGATTTGGAAGCTTGTCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGTCATCACAGGGGGAAGTCACGTAGTTCAGTCCATGAGTTCCATGAACAGCCTCCAGTGATACAGAACAGCCGCTGGGCTAGTCTTCCACCTGAGCTTCTTAGGGATGTCATCAAAAGGTTGGAAGCAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTGCATGTGCCGCTGTATGTAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAACAGTCCTGAGTTCTGTGGAAAGATTACTTTCCCTGTTTCCTTAAAGCAACCTGGATATAGGGATGGACTTATACAGTGTTTCATCAAGAGAGACAAATCTAAGCTCACATACCACCTCTTCCTTTGCCTTAGTCCTGCCCTGCTTGTCGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACACGAAGAACAACTTGCACAGAGTATATCATATCAATGGATGCAGATAACATATCGAGATCTAGCAGCACTTATATTGGAAAATTGAGGTCAAATTTTCTTGGCACTAAATTCATAATCTATGATACACAGCCTCCCTATAATAATGCTCAGCTTTCTCCACCTGGCAGAAGCCGTAGGTTCCATTCGAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTATAACATTGCCCAAGTCACCTATGAGCTGAATGTGCTAGGTACAAGGGGGCCACGCAGGATGCACTGTACCATGTTCTCAATCCCTGCATCGTCTCTTGAGCCTGGTGGCATTGTTCCAGGCCAGCCAGAGCTTCTTCCACGCTCCCTTGAGGACTCGTTCAGGAGCATCTCCTTCTCAAAATCAATCGACAATTCCACGGAGTTTAGCAGCTCTAGGTTCTCAGACATAGTTGGGCCTAGAAACGAGGATGAGGAGGGAAAGGAGAGACCACTAGTTCTCAAGAACAAGGCACCAAGATGGCATGAACAGTTGCAATGTTGGTGCCTCAACTTCAGGGGCCGTGTGACAGTTGCCTCTGTCAAGAACTTTCAACTGATAGCTGCAACACCGCCTGCCGCCGGTGCTGCTGTTGCTCCGACACCATCGCAGCCAACACAGTCTTCTTCTGATCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGGAAGGATATGTTTACAATGGATTATCGATATCCTCTTTCTGCATTTCAGGCATTTGCCATCTGCTTGACCAGCTTTGACACAAAACTGGCTTGTGAATAG 1375 0.4618 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSRSSVHEFHEQPPVIQNSRWASLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKEIVNSPEFCGKITFPVSLKQPGYRDGLIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFHSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMFSIPASSLEPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIVGPRNEDEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPAAGAAVAPTPSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g02239 429 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Bach8g02239 429 Gene3D - 48 101 - -
Bach8g02239 429 Pfam Tub family 114 424 IPR000007 -
Bach8g02239 429 FunFam Tubby-like F-box protein 110 429 - -
Bach8g02239 429 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Bach8g02239 429 MobiDBLite consensus disorder prediction 305 324 - -
Bach8g02239 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Bach8g02239 429 CDD F-box_AtTLP-like 53 97 - -
Bach8g02239 429 PANTHER TUBBY-RELATED 36 427 - -
Bach8g02239 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bach8g02239 429 FunFam Tubby-like F-box protein 48 101 - -
Bach8g02239 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Bach8g02239 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bach8g02239 429 Gene3D Tubby Protein; Chain A 110 429 IPR025659 -
Bach8g02239 429 MobiDBLite consensus disorder prediction 211 230 - -
Bach8g02239 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g02239 Bach-Chr8 25316499 25319388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g02239 1 429 TUB Transcription Factor Family AT1G76900 71.024 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach8g02239 Tub 1.3e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g02239 K19600 - qsu:111992792 776.933