Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g02222 GTCAATCTCTCACATGGAATGGCAGATCTTGTTAGCTACGGGAATGCCGACCGTGACATCGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTAAAATATGGTCGTAAGGGAAAACCCAAGTTTTGCCCATTTAGACTTTCCAGTGATGAATCATCTTTAATCTGGATATCAAGTAGTGGAGAAAGAAGCTTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTATTCCAACGTTATCTGCGTCCTGACAAGGATTATTTGTCTTTTTCACTTATTTATAACAACGGAAAGCGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTACTGGCCTCAAGGCACTTATATCTGCTGCTCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGTCTCTATCTTGACGATAGCAGAGACTTGACATCAACTAGTCCAAGTGAAAGCTCAGTCAGTGCCTCACTAGATATTAGCTCTCCTGACATTTCTGTGAGTCTTAATCGAAATACTTCTCCAAAGAGCTTTCAGCGTGTGAATACTGTGAATTCTGAACGGTCACATGCACCATCAGATTCAACAAATATGCAAGTGAAAGGATCTAGTTCAGATGCTTTTCGTGTAAGTGTTTCAAGTGCCCCCAGCACATCCAGTCATGGATCTACACCTGATGATTGTGATGCTCTGGGGGATGTATACATATGGGGAGAGGTTATCTGTGAGAATATTGTGAAAATTGGTGCTGATAAAAATGTCAGTTATTTCAGCCCTAGGGCAGATGTGCTTCTACCCAAACCACTGGAGTCCAATGTAGTTTTAGATGTTCATCATATAGCATGTGGGGTTAAACATGCTGCCCTAGTCACGAGGCAAGGTGAAGTGTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAGCCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTTCATACCTGTGCTGTTACAATGGCTGGAGACCTATATACTTGGGGTGATGGTACTCATAATGCTGGTCTTCTTGGTCATGGCACTGACATTAGTCATTGGATACCTAAGAGAATTGCAGGTCCACTGGAGGGACTTCAAGTTGCTTTGGTGACTTGTGGTCCATGGCACACAGCCTTAGTAACTTCAACTGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGAGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAGTAGCAGTTGCATGTGGAGTGTGGCATACTGCTGCTGTGGTGGAGGTTATAGTGACACAATCCAGTTCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGGCTTAAACCAACTTGTGTTCCTTCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACTGTTGGCCTGACAACATCTGGACATGTTTTTACAATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCTCAGTCTGATGGGAAAGTTCCTTGCTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACATGGGGAAAGGGTGCTAATGGGAGGTTGGGTCATGGAGATATTGAAGATAGGAAAGCCCCAACTTTAGTTGAAGCTTTAAAGGATAGACATGTGAAATATATTGCATGCGGTTCAAACTACTCTGCTGTAATATGCCTTCATAAATGGGTATCTGGTGCTGAGCAATCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTACAACTGTGGACTTGTGCATTGCCATTCCTGCAGTTCAAGGAAAGCATTAAGAGCAGCTCTGGCTCCTAACCCTGGCAAGCCATATCGTGTTTGTGATCCTTGTTATGCAAAATTGAACAAGGTTGCAGAAGCTGGCAATAATAATAATCGGAGGAATACTTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGGTTAGACAAGTCGGAGTTAAGATTGTCTAAGTCAACAGTACCTTCTAATATGGATTTGATCAAGCAGCTAGATAGTAAAGCAGCCAAACAAGGGAAGAAGGCTGATACATTCTCCCTAGTTCGCACCTCACAAGCGCCTTCTTTGCTTCAGCTGAAAGATGTTGTCTTGTCTACTGCTGTAGATCTGCGAGGAACAGTTCCAAGACCTGTTCTTACACCATCTGCAGTTAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCTCCTCGATCTGCTACCCCTATTCCGACAACATCAGGACTTTCTTTCTCCAAAAGTATTACCGATAGTGTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGTTGAAGTTACGTGCTCAGGTTGAGAGCTTGAAACAGAGATGTGAATTGCAAGAAGTAGAGCTTCAGAGGTCAGCAAAGAAAACTCAAGAAGCTATGGCAGTGGCTGCTGAGGAATCTACTAAATCTAAAGCTGCTAAAGAAGTCATAAAGTCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGGCTCCCTCCTGGAGTTTATGATGCTGAGAATAATATCAGACCAGCTTATTTTCCAAACGGTTTAGAGCCAAATGGCGTCCACTATCCAGATTCAAATGGCTATCCAGATTCAAACTCGAGACCTGAGTCAATCAGTGGCTCTAGCATGGTCTCTGTAGGAATTGAATCTTCTCTGTTGAACAGAACTGAGGGGAATCATCCTGGAATCTATGGAACTAATTTTTACCAACAAAGTCGTGGACTTGCAACCTCAAATGGAACAGATGGACACTCAGATGTTAGACTGCCAAATGGTGGCGCCACGCTTCAGACAAGCAGCAGTAACATGTTGGATATGGTTGATGGAAGAACTTCTGGGCCTTCGCCAGATGGCGAGGCTGGTTTGAGATCAAGGACTGCTTCATTGGGTGGTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTTGTGGCCCTGAAAGATGGAACTAGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGGGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGAGAAGGTATACGACAAGTACAATGTTCGTAGCACCGACAAGTCTTCTGGCCAAGCAGCACGAAGGGCAGATAGTGCTGCTGCTTCACCTGTTTCCCAATCTTAG 3402 0.438 MADLVSYGNADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPDKDYLSFSLIYNNGKRSLDLICKDKVEAEVWITGLKALISAAQGGRSKIDGWSDGGLYLDDSRDLTSTSPSESSVSASLDISSPDISVSLNRNTSPKSFQRVNTVNSERSHAPSDSTNMQVKGSSSDAFRVSVSSAPSTSSHGSTPDDCDALGDVYIWGEVICENIVKIGADKNVSYFSPRADVLLPKPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGDLYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVALVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTVAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFHKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYIACGSNYSAVICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDPCYAKLNKVAEAGNNNNRRNTLPRLSGENKDRLDKSELRLSKSTVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTAVDLRGTVPRPVLTPSAVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSVKKTNELLNQEVLKLRAQVESLKQRCELQEVELQRSAKKTQEAMAVAAEESTKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENNIRPAYFPNGLEPNGVHYPDSNGYPDSNSRPESISGSSMVSVGIESSLLNRTEGNHPGIYGTNFYQQSRGLATSNGTDGHSDVRLPNGGATLQTSSSNMLDMVDGRTSGPSPDGEAGLRSRTASLGGNSNQIEAEWIEQYEPGVYITLVALKDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYDKYNVRSTDKSSGQAARRADSAAASPVSQS 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g02222 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Bach8g02222 1127 ProSiteProfiles BRX domain profile. 1046 1101 IPR013591 -
Bach8g02222 1127 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Bach8g02222 1127 MobiDBLite consensus disorder prediction 698 717 - -
Bach8g02222 1127 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Bach8g02222 1127 Pfam Transcription factor regulating root and shoot growth via Pin3 1045 1100 IPR013591 -
Bach8g02222 1127 Gene3D - 13 131 IPR011993 -
Bach8g02222 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Bach8g02222 1127 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Bach8g02222 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 787 804 - -
Bach8g02222 1127 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Bach8g02222 1127 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Bach8g02222 1127 Coils Coil 833 867 - -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 1103 1127 - -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 1016 1038 - -
Bach8g02222 1127 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Bach8g02222 1127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 701 IPR013083 -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 172 207 - -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 783 820 - -
Bach8g02222 1127 SUPERFAMILY PH domain-like 13 123 - -
Bach8g02222 1127 CDD PH_PLC_plant-like 12 124 - -
Bach8g02222 1127 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 898 - -
Bach8g02222 1127 FunFam Putative E3 ubiquitin-protein ligase HERC1 12 132 - -
Bach8g02222 1127 MobiDBLite consensus disorder prediction 933 949 - -
Bach8g02222 1127 Gene3D - 462 630 IPR009091 -
Bach8g02222 1127 Gene3D - 175 461 IPR009091 -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Bach8g02222 1127 Pfam Transcription factor BRX N-terminal domain 877 912 IPR027988 -
Bach8g02222 1127 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Bach8g02222 1127 SMART fyve_4 623 692 IPR000306 GO:0046872
Bach8g02222 1127 MobiDBLite consensus disorder prediction 925 949 - -
Bach8g02222 1127 SUPERFAMILY FYVE/PHD zinc finger 625 695 IPR011011 -
Bach8g02222 1127 CDD FYVE_like_SF 634 687 - -
Bach8g02222 1127 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Bach8g02222 1127 Coils Coil 882 902 - -
Bach8g02222 1127 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Bach8g02222 1127 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g02222 Bach-Chr8 24891253 24897594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g02222 1047 1117 Major Intrinsic Protein MIP AT1G31880 46.479 6.73e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g02222 - - gmx:100783270 1853.95