LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01960	ATGGCTCCGCCGCCTCGGGTGGAAAACAGCGGCGAATCGACCGCTGGTGATTCTCAGAGATCCGTCCCGACGCCGTTTCTGATTAAAACTTATCAGCTTGTTGACGATCGAGCAATAGACGATGTCTTATCTTGGAACGAAGATGGAACCAGTTTCATCGTTTGGAATCCGACGGTTTTTGCTAGAGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGACAGCTCAACACATATGGATTCAGAAAGGTTGTACCAGATCGGTGGGAATTCTCAAACGATTGTTTTCGTAGAGGTGAGAAGAGACTTCTATGCGAAATTCAACGTCGAAAAGTTTCACAACCAGCAGGAACAACAGCAACTGCCACCGTCGGAGTACTGGCGCCGAGGACGTTGACTGCGATAGCAATAGCAAAGCCGATTATATCACCTTCAAACTCTGGGGAGGAACAAGTTATTTCGTCAAATTCACCGCCGACTATAGCTCCGGTGGAGCTCTTGGACGAGAATGAGAGATTGAGAAAAGAGAATGTTCAGTTGACGAGGGAGTTAGCAGAGATGAGATCTCTCTGTAATAAAATATTTAATCTGATGTCGAAATACGCCAATAACCAAACAGATACGGCTGCACAAGGTACCAGAGAGAGCGGCACTGCAGTGAAACCTCTTAATTTGATGCCAGTGAAGCGGAGCTCCGGCGAGGAAGCGATGGCCGTAGATGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGCGGGAAGCGAGCGAGAGACGGTGGAAGAAGGGGCTCGGAAGATGAGACAGTGTTGAGCTTGCATCAGCCAGGACCTGCGGAGTTGAAATCGGAGCCGTTGGATTGTCAGAGCCGTCCCGATAATCAGGAAACGCCATGGCTTAATCAGTGCCATGTACCGGATCAGAGAGTCTGTAATTGA	951	0.4826	MAPPPRVENSGESTAGDSQRSVPTPFLIKTYQLVDDRAIDDVLSWNEDGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKVSQPAGTTATATVGVLAPRTLTAIAIAKPIISPSNSGEEQVISSNSPPTIAPVELLDENERLRKENVQLTRELAEMRSLCNKIFNLMSKYANNQTDTAAQGTRESGTAVKPLNLMPVKRSSGEEAMAVDEMNPKLFGVAIGGKRARDGGRRGSEDETVLSLHQPGPAELKSEPLDCQSRPDNQETPWLNQCHVPDQRVCN	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g01960	316	Gene3D	-	18	116	IPR036388	-
	Bach8g01960	316	SMART	hsfneu3	22	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	SUPERFAMILY	"Winged helix" DNA-binding domain	23	115	IPR036390	-
	Bach8g01960	316	MobiDBLite	consensus disorder prediction	278	304	-	-
	Bach8g01960	316	MobiDBLite	consensus disorder prediction	1	22	-	-
	Bach8g01960	316	PRINTS	Heat shock factor (HSF) domain signature	64	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	PRINTS	Heat shock factor (HSF) domain signature	26	49	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	PRINTS	Heat shock factor (HSF) domain signature	77	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	221	IPR027725	-
	Bach8g01960	316	FunFam	Heat stress transcription factor B-4	18	116	-	-
	Bach8g01960	316	ProSitePatterns	HSF-type DNA-binding domain signature.	65	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	Pfam	HSF-type DNA-binding	26	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g01960	316	Coils	Coil	175	195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01960	Bach-Chr8	15676703	15677745	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g01960	2	316	HSF	AT5G62020	49.096	2.91e-94	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bach8g01960		HSF_DNA-bind	2.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01960	K09419		-	gmx:100812267	428.328