LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01945	ATGTCCTTGCTGGTGGGGAATCCGCGTGAGCCTTCGCAGACGCACCCTCCACGCCATCGCTGCCACAGCAGCAACCAGTGCAGCACTAGACCTGCAGCCTCCATCGCCAACAGTAGTGACGCCAAGAACCAGCCACCGCAAGCCCAGCAACTGCACCCTCCATGCCATCGCTGCCATAACAACAACCAGTGCAGCACCAGACCTGCAGCCTCCATCGCTAACAGCAGCAACGCCGAGAACCAGCCACCGCAAGCCCAGCAACTTACACGATCGCCCCCAGCCATCTCGCACCCACTCTACTCTAGCTCCAGTGAGTGTTCGATTTTCGAAGGTTTCGTGGTCTCAGGCGCAGCTTACCAAGGGAAAATGAGGCCGATTTTCTGTGGGAATTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGACTTTTTAGAAGATACGGGAAGGTTGATAGGGTGGATATGAAGTCTGGGTTTGCTTTTATCTATATGGAAGATGAACGAGATGCTGAGGATGCGATCCGTGCCCTTGATCGAGCAGAATTTGGTCGGAAGGGACGCAGACTTCGGGTGGAATGGACGAAGCATGAACGTGGCATTAGAAGACCTGGTGGTTCAAGAAGATCCTCAGCTAATATGAGGCCATCAAAGACCCTATTTGTGATTAATTTTGATACATACCGCACCAGGACTAGGGATTTGGAGAGGCACTTTGACCCATATGGTAAGATTGCCAATGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGATGCCACCAGAGCCTTGGAAGCTACCAATATGAGCAAGTTATTGGACCGAGTTATTTCTGTTGAATTTGCTGTAAAGGATGATGATGATAGGCGGAACGGAAATAGCCCTCAAAGAAGTTATGATGGTCCAAGTGATAGAGGTCGTGATAGAAGACGATCACCCAGTCCTTATCATAGAGAAAGAGGTAGCCCTGATTATGGTCGTACTGCTAGTCCATATAGAAGAGAGAGGGGCAGCCCTGACCATGGCCGTGACCGCAGCCGAAGTCCCTTTAGGAGAGATCGAGCCAGCCCTGATTATGGTCGTGGAAGTCGCAGTCCACATAGAAGAGAGAGGGATGGTTCTGATCATGTTCGTGGCTCCAGCCATAGTCCTTATCAAAAAGAGGGTATGAGAACTAATGGCAACTCTCCCCCCCATAGTCCTAATGGAAGAGAGAGGATAAGCCCTCAAAATGGCCGTGATTTGAGCCGTGGTCCTTATGAAATGGAGAGAACTAGTCCTGAAAATGGTCATGGCTCCAGGCGTAGTCCTGATACAAGAGGGAATACCAGTCCTTACAATGGTTATGCAGGGAGCCCAAATTCTGTGCCTGATCCCAGGGACAGTCCCAACTCTGATGCTCCTGAAAGTCCCATGCAAGAAAGATATGGCAGCCAGTCACCCCCTGCGGAAGAATGATTCAGTCTTGGATGAGGTCAGCATTGAGCGATAACTTATGCTGTGCAATTGTGTAGTTTCAGGAAAACGCTATAGTGTAGTAGCAGTTAAAGTTTGGAACTTATTTAGGGGGTTGTCAGTGTTAGTTTATTCGTTAACTCCATGTTCTTTTGTTTCTGCTTGATATGTATTGGAAATCTTGTTTTAACAATCCAATTCGATAGTGATACTGAATCATTG	1689	0.4843	MSLLVGNPREPSQTHPPRHRCHSSNQCSTRPAASIANSSDAKNQPPQAQQLHPPCHRCHNNNQCSTRPAASIANSSNAENQPPQAQQLTRSPPAISHPLYSSSSECSIFEGFVVSGAAYQGKMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRAEFGRKGRRLRVEWTKHERGIRRPGGSRRSSANMRPSKTLFVINFDTYRTRTRDLERHFDPYGKIANVRIRRNFAFVQYESEDDATRALEATNMSKLLDRVISVEFAVKDDDDRRNGNSPQRSYDGPSDRGRDRRRSPSPYHRERGSPDYGRTASPYRRERGSPDHGRDRSRSPFRRDRASPDYGRGSRSPHRRERDGSDHVRGSSHSPYQKEGMRTNGNSPPHSPNGRERISPQNGRDLSRGPYEMERTSPENGHGSRRSPDTRGNTSPYNGYAGSPNSVPDPRDSPNSDAPESPMQERYGSQSPPAEE	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g01945	489	SUPERFAMILY	RNA-binding domain, RBD	124	292	IPR035979	GO:0003676
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	1	96	-	-
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	305	386	-	-
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	18	96	-	-
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	290	489	-	-
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	389	413	-	-
	Bach8g01945	489	MobiDBLite	consensus disorder prediction	440	481	-	-
	Bach8g01945	489	Gene3D	-	119	209	IPR012677	-
	Bach8g01945	489	Gene3D	-	210	302	IPR012677	-
	Bach8g01945	489	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	218	441	-	-
	Bach8g01945	489	CDD	RRM1_AtRSp31_like	124	195	-	-
	Bach8g01945	489	FunFam	Serine/arginine-rich splicing factor RS31	209	299	-	-
	Bach8g01945	489	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	126	184	IPR000504	GO:0003723
	Bach8g01945	489	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	219	281	IPR000504	GO:0003723
	Bach8g01945	489	SMART	rrm1_1	125	192	IPR000504	GO:0003723
	Bach8g01945	489	SMART	rrm1_1	218	284	IPR000504	GO:0003723
	Bach8g01945	489	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	124	196	IPR000504	GO:0003723
	Bach8g01945	489	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	217	288	IPR000504	GO:0003723
	Bach8g01945	489	FunFam	Serine/arginine-rich splicing factor RS31	123	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01945	Bach-Chr8	15281512	15287675	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g01945	122	291	Eukaryotic Initiation Factors Gene Family	AT1G49760	24.064	6.20e-08	53.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01945	K12893		-	gmx:100781534	563.918