Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g01882 TCTCCGTCGTCGTTTCCTATCTTCAAAAGTTACATAAAAACCCACCCTTCCATCCTTCTACCTCCACCGTCCGATTCCTCACCTTCATATCACCTAATCTAGAAGCTTCCAACTGTTTCTGGCGATATAGATCTCACTCGCGCGCCTGTTTCCCGCTCCATTATGGTCGTGAGTGGAGGGAAGCCATTAAAGCGGATGAAGAGAAGAACAACAGCTGATTATCACGATTTCCTCACGTTTCCACCGGCGTCTTTCACTGGATTGGAGGATTTCTCCGGCGGACCTTTCCGGACGAATGTGCGCTCCTTCCTGTCGAAATACGCGCTGCTGCCGCCACCGTCAGCTTTGTTCCCTCACCTGTTGACGTGGCAGATCCTGTTCCGGGTAGGGAACCTTACGGACGGACCGGAGTCGAGCCCGGCGACGGTGTGTCTTGACGTTGTGGAAGAGGATGTGGCCAGATCCAGATCCGTCTATTGCGACCATTGTCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGCGAGAAGCGTTACCATTTTGTAATCAAGGCTGATGGTAGCAGTATTGGTGGGTACCACAAACCATGTATGTGCTGTGGAGATATCCTGCATCTCTCTGAGTCCAAGTGCAAGTCATGCAACCATGTGACAACTTCAGATGATGTTGAAGACTGGGTGTATCAACAGTTAGAAAACACGACTCATCTTTTGCATGGTGTAGTCCATGCCAATGGGTATGGGCATCTTCTCCGGGTTAATGGTAGAGAAGGGGGCTCAAGAATTGTTTCTGGTTGCCATATTATGAACTTTTGGGATCGCCTTTGCACAACACTGGGAGTTAGAAAAGTTAGCGTGATGGATGTATCAAAGAAATATGGTCTGGAGTATCGTCTGCTCCATGCCATTTTGAAGGGACATCCATGGTATGGTGAATGGGGATATCAATTTGGCTTTGGTAGCTATGGTGTTACACATGAAGTGTATAGGTCTGCGGTTGAAAACCTTTCCAATTTACCTCTGTCCATCTTCCTCTCACAGAGACAAAAACCTGACTCTTCTTTGCTGAACACTATATCATATTACCAGTCTTTATCCAAGCATGAGCTTGTAAATATAAGAGACCTCTTTTGTTTTCTGATGGGTATGGTTCATGATGCCCGCAAGACCAATTCAAGTTATGATGATGTCACCTGCAAGAAGCGTCGTTTTAATGCTGCAGGGGCATGTTCATGGGTTAAGAGTGATATTGAACGCGTGGAGGAAGCCATGTTCAGAGTGCTTCGTGCAGTGTCTGGGTCCAATTGGGTAAGCTGGCGCTCTCTTAGGGGAGCTGTCTGTAAGGTGGCCTCTCCAGAGCTGCTTGATCACTGCCTTGGAGAACTGGGAGGGAAAGTGGTCTGTAATGGAATGGTTGTTAAGACCCGACGCAATCCTGATACTGGTGCTCTTGAGTACAGACTTGAGGCCTGGAATGATTCTTGCCATGGAACTATAGCAAACAATAGTTCCTCAGCCTTGAAGTGTCCATCTGAAGACAAGCTTTTGTATGACTTAAGATATTTATACAAGTCTTTGCTTCTTCCTCAAACAATGCTAACCTATGGCCCTGAGGGGATAAGGACTTGTGCAGTGAGCTCTGTTCAGAAACTTCTTGACTGCAAGCAGTTTGTGAAAGATTTCAGGCCTGACATAACGCCAATGACAAAGTTATATAGAATACGCCTACGATGTCATGTACATTTTGTGGATGAGTCTGAAGAACCTGGTGTAAACCCTCCACCAGAGTTAATTGTCCTACCCACAAATTCCACAGTGTCTGACCTAAAGATTGAAGCAGCGAATGCTTTTCAAGATGTATATGTCATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAAAGAAGAGGTTTATGTCCAAGGAAGATGCATTGGAAAGAGTGGATTGTCCAAGTTCCGGATGGAACGGGGAATCGAGAGGTGGACTGTGGATTGCAGCTGCGGAGCCAAGGATGACGATGGGGAGAGAATGTTGGCTTGCGATATATGTGGAGTGTGGCGACACACCAGGTGTTCAGACATTCATGATGCAGATCCAGTCCCTGCTCGGTTTGTTTGCCCAAGATGCCAAAACTGTGACTCAAAACCTAAACCTAGTAGTGGCCACTGTAAAGATGAGACCGTTACTGACATTACTACTACAAGTAGCTGCTTTGGAAATGGCTTGCCACTGCCTTCTGATGTTAGGTGA 2298 0.4656 MVVSGGKPLKRMKRRTTADYHDFLTFPPASFTGLEDFSGGPFRTNVRSFLSKYALLPPPSALFPHLLTWQILFRVGNLTDGPESSPATVCLDVVEEDVARSRSVYCDHCRVVGWSGHPVCEKRYHFVIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYQQLENTTHLLHGVVHANGYGHLLRVNGREGGSRIVSGCHIMNFWDRLCTTLGVRKVSVMDVSKKYGLEYRLLHAILKGHPWYGEWGYQFGFGSYGVTHEVYRSAVENLSNLPLSIFLSQRQKPDSSLLNTISYYQSLSKHELVNIRDLFCFLMGMVHDARKTNSSYDDVTCKKRRFNAAGACSWVKSDIERVEEAMFRVLRAVSGSNWVSWRSLRGAVCKVASPELLDHCLGELGGKVVCNGMVVKTRRNPDTGALEYRLEAWNDSCHGTIANNSSSALKCPSEDKLLYDLRYLYKSLLLPQTMLTYGPEGIRTCAVSSVQKLLDCKQFVKDFRPDITPMTKLYRIRLRCHVHFVDESEEPGVNPPPELIVLPTNSTVSDLKIEAANAFQDVYVMFRRFQVDELLGYSGVDDSTQVKLLLGSKEEVYVQGRCIGKSGLSKFRMERGIERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDADPVPARFVCPRCQNCDSKPKPSSGHCKDETVTDITTTSSCFGNGLPLPSDVR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g01882 711 CDD PHD_MMD1_like 626 671 - -
Bach8g01882 711 SMART PHD_3 626 672 IPR001965 -
Bach8g01882 711 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 683 - -
Bach8g01882 711 Pfam PHD-finger 627 674 IPR019787 -
Bach8g01882 711 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Bach8g01882 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 677 IPR013083 -
Bach8g01882 711 SUPERFAMILY FYVE/PHD zinc finger 616 673 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g01882 Bach-Chr8 14148624 14153898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g01882 85 682 PHD Transcription Factor Family AT5G22260 31.083 1.05e-86 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach8g01882 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g01882 K26271 - gmx:100818189 1088.56