Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g01839 ATGTCTTCTGCCGGCGGGAACTCCGGCGGCGGTAGCGGTGGTGCTGCTGGTGTTGTCTACGGTGCTCCTCAAAACTATTTCTGCCACCTGTGCAACCAAACCGTCTCCATTTCGCCCTCCTCCTCTGATCTCGTCTGTCCGAATTGCAACGGTGGTTTTATAGAAGAAGTGGAAAATCCAATCCCTAGCCTCAATCCTAACCCTTCTAGTCCCTTTTTCTCGTTCTCGTCGGAGTTTGGTGGCGGAAGTGGTGGCTTACCTCTTATCTTCTCCTCCGGCGGCGACAGTGGTGCCGGTGGACCGATGTTCGATGATCTTTCTGCGCTATTTGGCTCTGGACCTAACCGATCATCCCCTTTTTCAGACGCCGATGCCTTCAACCCTTTTATGTTCCTTCAGAACTATCTTCAAACCCTTAGAGCTGGTGGTGCTAATGTACAATTTGTGATAGAGAACTCGGCAGACCCAAGTGGTGGCCTCCGTCTTCCCACCAATCTTAATCTTGGTGATTACTTTTTCGGCCCCGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAATGACCCCAACCGATATGGGACACCTCCAGCTTCAAAATCTGCTATTGAGGGGCTGCCTAATATCAAAATTTCCAAGGAGTTGTTGGCTTCTGATTCATCGCAGTGTGCAGTGTGTAAAGACTCATTTGAGCTTGGGGAAGAGGCGAAACAGATACCATGTAAACACATTTATCATAAGGATTGCATTTTGCCTTGGTTAGAAATGCACAATTCTTGTCCTGTTTGCCGGTACGAATTACCAACTGATGATCCTGATTACGAGCAAAGGGTTCGTGGCACCTCTGGCTCTGGTCATGTGAATCAAAACCAATCCACAGGGGTTGGTGGCTTCGGTGACTCTTCTGAAGGTGGTAATGCTGGAGGTGGTGCAGCATCTGGAGAAAATGTCCAGACACCAAGAACAGCTGAGCGGAGGTTTAGAGTTTCTTTGCCATGGCCTTTTAGGCAATTTAGTTCCATTGCAGAGACAAGCAATGTTGGGAATGCCAACAACTCTGGAAATAATAGTGGGGAATCAAATCCTGGAAGTAGGGGAAATCAGAGTTTTGGGTCAGAGACCAGACAAGAAGATCTCGACTAA 1140 0.4833 MSSAGGNSGGGSGGAAGVVYGAPQNYFCHLCNQTVSISPSSSDLVCPNCNGGFIEEVENPIPSLNPNPSSPFFSFSSEFGGGSGGLPLIFSSGGDSGAGGPMFDDLSALFGSGPNRSSPFSDADAFNPFMFLQNYLQTLRAGGANVQFVIENSADPSGGLRLPTNLNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPNIKISKELLASDSSQCAVCKDSFELGEEAKQIPCKHIYHKDCILPWLEMHNSCPVCRYELPTDDPDYEQRVRGTSGSGHVNQNQSTGVGGFGDSSEGGNAGGGAASGENVQTPRTAERRFRVSLPWPFRQFSSIAETSNVGNANNSGNNSGESNPGSRGNQSFGSETRQEDLD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g01839 379 MobiDBLite consensus disorder prediction 343 379 - -
Bach8g01839 379 Pfam Ring finger domain 221 263 IPR001841 -
Bach8g01839 379 Pfam zinc-ribbon 24 56 IPR039525 GO:0061630
Bach8g01839 379 CDD RING-H2_RNF126-like 221 263 - -
Bach8g01839 379 MobiDBLite consensus disorder prediction 273 321 - -
Bach8g01839 379 FunFam E3 ubiquitin-protein ligase RING1-like 183 269 - -
Bach8g01839 379 SMART ring_2 222 262 IPR001841 -
Bach8g01839 379 MobiDBLite consensus disorder prediction 280 298 - -
Bach8g01839 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 267 - -
Bach8g01839 379 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
Bach8g01839 379 SUPERFAMILY RING/U-box 202 270 - -
Bach8g01839 379 MobiDBLite consensus disorder prediction 343 373 - -
Bach8g01839 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 269 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g01839 Bach-Chr8 13602693 13603832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g01839 163 275 C3H Transcription Factor Family AT5G01980 50.442 5.63e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g01839 K11982 - qsa:O6P43_005293 459.529