LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01685	ATGGCAAATCGACTGAAGGAAGATGAAAAAAATGAAAGAATAATTCGAGGTCTTCTCAAACTTCCGGAGAACCGAAGATGTATTAACTGCAACGGCCTGGGACCACAATATGTGTGTACGAATTTCTGGACATTTGTTTGCACAAACTGTGGTGGAATACACCGAGAATTTACACATCGAGTAAAATCTATTTCAATGGCCAAATTTACTTCACAAGAAGTTAGTGCACTACAGGAAGGAGGAAATAAGCATGCAAAAGAAATTTATTTTAAAGAATGGGATGCCCAGCGGCAGTCCTTCCCTGATAGCAGTAATGTTGACAGGCTCCGGGTATTTATTAAGCATGTTTATGTAGATAGAAGATTCAGTGGTGAGAGGGCTTATGACAAACCACCAAGAGTTGATACATATCAGGGAGGGTCTAAAAGTCCACCATATGATGAAACATATGAACGTCGTTATAGTGACAGGTCTAGTCCTGGTGGAAGAAGTTATGATGAGAGAAGAAGTCCTGGATATGATCAGGAAAGTAGGCAATATGGTGATTTCAAGAGAAGTCCTGGTCGCCCCCCTATAGTCACTGATTGGCACCGTGAAGATAGGTTTGGAGATCGTAGAATATCTGATGGAGACTATAAGCCAGAAGGGCAATCACCTGACCGAGTGAAAGATCTGGATTCTTCAAGTCCACCTGTGGTACGGCCTGTTAGAGATATATTGGGAGAAAATGTAGTACCTCTTCGAATTAGTGAACCTCCTAAAGGGGGCAGTGGAAAGGCAGCTGATGGTTCTGCACTTACTCAGAGAACTGCTTCTTCTAGTAGCTTGGCATCCAGCAATGGGAACCCAGTTGAAGTTAAGTTGGAGACAACTAAGAGCCTGATTGATTTTGATGCTGAGCCTGAACCTCCGGTTGGTCCAGCAATTCCTCAAGCCCAAAAAACAATTGTGGCTCAATCTCTTGTGCAGCCAGAAAATTCTGGTGGTGAAACCAACTGGGCTTCCTTTGATTTTGCTCCTGAGGCTAAAGCAAATCAAGGTCCTTCAAATGTAAATCCACTGGAATCTGTGCTATCGCAATTATCAGTGTCAGAATCTGTACCTGCAGGGCATGTGCTAGCACCAGGTCTTACTTCTACTGCTGCAGGCACTGCAAGTGTTAGCAGCTTCTCAACATACCCACCCAGTGGTGCTTCAGTAACAATGCCTGGGCCAACGACAGCATCCCCTCTCAATGGTCCAGGTCAGTGGAACAGTATGCAGCATCAACAATCTTTGTTCCCTGCTACTGTTAGCCAGTCTGCTTCCCCACAATTTACACCACCAGTAGGTGCTTTGAATAATCAGCCATGGAATATACCTCATGCTCAGATACCACAAGGGCATCATAGCATGCCAACACCTCATACATCACATATTGTCTCAAAGCCTACCAATGAGGCTACCTCTGGTACTGTTTTGCCATCTTCTACTGTGGAAGTAAAACCAATTGGAAGAAAGGAACTTCCTGAGGATCTTTTTGCTCTAAAATATTCACCCTTCGCTTCTCCAGCTCCAGGGTGGCAAATTGGTCCTCCCCATGGCATGGCTATCCAAATGCAATATAATACTGTGCCGTTCCAGCCTATGCCAAGTTTTCCACAATCATCAAAAGCAACAAATCCATTTGATGTCACTAGCGAGGCACATCCAGTACAAGCCCCAACATTTCCTTCTATGTCGTCATTGCAAGGTGCTTTGCCTAGTATATCAGCTTCTTCAGGTTTGATACATCCTTCAAGCTTGGGTAATCCATCACTTGCTTGGATGCCACCCCAGTCACCGTCATATGGATATATACTGCCCCCACAAATACAAACTCATACATCTGCAATGGCATCAGGGGTGTACATGGGGCAACAAATGCCGGCTAACATGCCAATGCCAAGGCATCAAGAAATTGGGGGTCTTAGTACTGAGGGAGCTGCTTTTGGCTCCTCAAATCCTGCTCAACAGCCGCCAGGTATGTTCCCATCAACCGCTGCCCCAAATCCCTTTCCTGCGGGTGGGAATCCATTCGGATGA	2064	0.452	MANRLKEDEKNERIIRGLLKLPENRRCINCNGLGPQYVCTNFWTFVCTNCGGIHREFTHRVKSISMAKFTSQEVSALQEGGNKHAKEIYFKEWDAQRQSFPDSSNVDRLRVFIKHVYVDRRFSGERAYDKPPRVDTYQGGSKSPPYDETYERRYSDRSSPGGRSYDERRSPGYDQESRQYGDFKRSPGRPPIVTDWHREDRFGDRRISDGDYKPEGQSPDRVKDLDSSSPPVVRPVRDILGENVVPLRISEPPKGGSGKAADGSALTQRTASSSSLASSNGNPVEVKLETTKSLIDFDAEPEPPVGPAIPQAQKTIVAQSLVQPENSGGETNWASFDFAPEAKANQGPSNVNPLESVLSQLSVSESVPAGHVLAPGLTSTAAGTASVSSFSTYPPSGASVTMPGPTTASPLNGPGQWNSMQHQQSLFPATVSQSASPQFTPPVGALNNQPWNIPHAQIPQGHHSMPTPHTSHIVSKPTNEATSGTVLPSSTVEVKPIGRKELPEDLFALKYSPFASPAPGWQIGPPHGMAIQMQYNTVPFQPMPSFPQSSKATNPFDVTSEAHPVQAPTFPSMSSLQGALPSISASSGLIHPSSLGNPSLAWMPPQSPSYGYILPPQIQTHTSAMASGVYMGQQMPANMPMPRHQEIGGLSTEGAAFGSSNPAQQPPGMFPSTAAPNPFPAGGNPFG	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	263	285	-	-
	Bach8g01685	687	Gene3D	Arf GTPase activating protein	1	130	IPR038508	-
	Bach8g01685	687	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Bach8g01685	687	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	463	486	-	-
	Bach8g01685	687	PANTHER	ARFGAP/RECO-RELATED	1	687	IPR044820	GO:0005096
	Bach8g01685	687	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	386	408	-	-
	Bach8g01685	687	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Bach8g01685	687	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Bach8g01685	687	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Bach8g01685	687	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	654	668	-	-
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	146	183	-	-
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	652	687	-	-
	Bach8g01685	687	CDD	ArfGap_AGFG	12	122	-	-
	Bach8g01685	687	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	134	-	-
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	128	285	-	-
	Bach8g01685	687	MobiDBLite	consensus disorder prediction	191	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01685	Bach-Chr8	11879811	11885104	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g01685	12	146	C2H2 Transcription Factor Family	AT4G05330	32.624	9.97e-13	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01685	-		-	gmx:100781002	839.721