LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01573	ATGTATAGAATAATATCCACGCCGGCCTCTAAATTCCGCCAATTCCGCGCCCAAGCCACCACCGACGAGGAACACGCCCAACACATTCTATGGCGATACCAAATCCTCGACCCAAACAGCGAGATTGTCGCAAAATGGAACGTGGTATTCCTCATTACCAGTCTCCTTGCGCTTTTCGTAGACCCTCTTTATTTCTACCTACCCTATGTCGGAGGTCCGGCTTGCTTGGACACCGATCCCTCATTGAGCATTGTGGTCACTTGCCTTCGTTCCGTGGCAGACCTTTTCTACGTTCTCCATATGCTCATGAAGTTTCGGACCGCCTTTGTCTCCCCGAGTTCTAGGGTGTTTGGCCGTGGTGAGTTGGTTATGGATCCCCGAGAAATTGCCGTTCGATATTTGAAGACAGATTTTGTCATCGATCTCGCCGCAACGCTTCCACTGCCCCAGATAGTTATTTGGTTAGTCATTCCAGCAACAAGAAACTCAAGAGCTGATCATGCCAACAACACTCTTGCTCTTTTTGTTCTTATTCAGTATTTTCCGAGACTGTTTCTTATCTTCCCTTTGAACCGGCGTCTTTTAAAGTCCTCGGACGTTCTTACCAAGACTCCCTGGACAGGAGCTGTATACAATCTGTTGCTCTACTTGCTAGCCAGTCATGTTATTGGAGCTTCATGGTATCTGGCCTCAATAGGGCGACAATTTTCCTGCTGGAAATCTGAGTGCAGAAAGGAAAATACGAATGTCGTGGCTTGCCTTCCTAGTTTTCTTGGTTGTAATAGTTTGTCGTTACCTGATAGGACGTACTGGCTAAATATCACCCAAGTTGTTGCCAATTGCGATGCAAAGAACGAGAACAAATTTAAGTTTGGGATATTTGCAGATGCTTTTAGTAATGACGTAGCTTATTCCAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCATATGGACAGACTTTGGACACCACCACCTACCTTGGTGAGACAACTTTTTGCATTGTCCTATGCATTGTTGGATTAATTCTCTTTTCACTACTGATTGGCAACATGCAGACATATATTTCGTCGATGTCAATAAGAATTGAAGAATGGAGAATTAAAAAAAGAGACACTGAGGAGTGGATGAGACATCGGCAGTTACCTCCAGAATTGCAGGATCGTGTTCGTCGTTTTGTTCAATATAAATGGCTTGCCACAAGAGGAGTTGACGAAGAGTCCATATTGCAGTCATTACCTTTAGACCTTCGTCGTGAAATACAACGTCATTTATGTCTTTCTCTTGTTCGCCGTGTCCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCCATTTGTGAATGCCTTAAGTCATCATTGAATACAGAAGGAACCTACATATTTCGGGAGGATGATCCAGTAGATGAAATGGTATTTGTTATTAGAGGGCAACTGGAAAGCTCCACAACCAATGGAGGAAGGTCAGGATTCTTCAACTCAATCACCCTCAGACCTGGTGACTTCTGTGGGGAAGAATTATTGACATGGGCCTTATTGCCTAACCCTAGTATAAACTTGCCTTCTTCTACTCGGACTGTTAGAGCCCTTACTGAAGTTGAAGCTTTTGCCCTTCAGGCAGAGGATCTGAAAATTGTGGCAGCTCAATTTAAACGTCTTCACAGTATGAAACTTCAGCATGCATTTAGGTATTATTCCCATCAGTGGAGAACATGGGGTGCTTGCTTCATACAAACTGCTTGGAGAAGATATCTGAAAAGGAAAGCCACGAGGGAGTTATCCATGAAAGAGGGCTTCTACTACATGGTAATGCTTGAAGGCGGTCCTAGTGACAGTGATGTGCAGGGAAGTTATGAGGATGAGAACCAGAGCTCATCACTCGGCCATGAAAATAGTGGTCAAAATCTTGGTGCTACTGTTGTAGCTTCTAAGTTTGCTGCAAATACGAGGAGGGGTGTTCTCAGTAGCAGTACAGTGCGAACCAGGGATCCTGTTCCCCAATTGTTCAAACCAGATGAACCTGATTTCTCTTGA	2058	0.4402	MYRIISTPASKFRQFRAQATTDEEHAQHILWRYQILDPNSEIVAKWNVVFLITSLLALFVDPLYFYLPYVGGPACLDTDPSLSIVVTCLRSVADLFYVLHMLMKFRTAFVSPSSRVFGRGELVMDPREIAVRYLKTDFVIDLAATLPLPQIVIWLVIPATRNSRADHANNTLALFVLIQYFPRLFLIFPLNRRLLKSSDVLTKTPWTGAVYNLLLYLLASHVIGASWYLASIGRQFSCWKSECRKENTNVVACLPSFLGCNSLSLPDRTYWLNITQVVANCDAKNENKFKFGIFADAFSNDVAYSSFKERYFYCLWWGLRNLSSYGQTLDTTTYLGETTFCIVLCIVGLILFSLLIGNMQTYISSMSIRIEEWRIKKRDTEEWMRHRQLPPELQDRVRRFVQYKWLATRGVDEESILQSLPLDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICECLKSSLNTEGTYIFREDDPVDEMVFVIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALLPNPSINLPSSTRTVRALTEVEAFALQAEDLKIVAAQFKRLHSMKLQHAFRYYSHQWRTWGACFIQTAWRRYLKRKATRELSMKEGFYYMVMLEGGPSDSDVQGSYEDENQSSSLGHENSGQNLGATVVASKFAANTRRGVLSSSTVRTRDPVPQLFKPDEPDFS	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g01573	685	Gene3D	Helix hairpin bin	370	433	-	-
	Bach8g01573	685	Pfam	Ion transport protein	46	366	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Bach8g01573	685	MobiDBLite	consensus disorder prediction	659	685	-	-
	Bach8g01573	685	FunFam	Cyclic nucleotide-gated ion channel 1	369	433	-	-
	Bach8g01573	685	MobiDBLite	consensus disorder prediction	623	642	-	-
	Bach8g01573	685	SUPERFAMILY	cAMP-binding domain-like	372	563	IPR018490	-
	Bach8g01573	685	MobiDBLite	consensus disorder prediction	620	642	-	-
	Bach8g01573	685	ProSiteProfiles	cAMP/cGMP binding motif profile.	442	552	IPR000595	-
	Bach8g01573	685	Pfam	Cyclic nucleotide-binding domain	465	552	IPR000595	-
	Bach8g01573	685	SUPERFAMILY	Voltage-gated potassium channels	38	364	-	-
	Bach8g01573	685	CDD	CAP_ED	442	573	IPR000595	-
	Bach8g01573	685	Gene3D	-	48	367	-	-
	Bach8g01573	685	Gene3D	Jelly Rolls	440	560	IPR014710	-
	Bach8g01573	685	FunFam	Cyclic nucleotide-gated ion channel 1	440	558	-	-
	Bach8g01573	685	SMART	cnmp_10	442	573	IPR000595	-
	Bach8g01573	685	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	19	684	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01573	Bach-Chr8	10930037	10934878	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g01573	29	685	Ion Channels	AT5G14870	69.701	0.0	984

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01573	K05391		-	qsa:O6P43_004600	1084.71