Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g01540 ATGATCACGATCCAACCACATTTCTCGCTTCTATTCTCCCTTCAACCCTCAAGGCGACCTTGTGAGACTTCTATTGCTGATTCCCTTGCAATGGCCGCAACTGCAACTGCCTCTTCAGTTGGTCCACGCTATGCTCCTCCGGACCCAACACTTCCAAAACCATGGCGGGGACTTGTTGATGGTAAGACGGGGTACCTTTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGGCCCATAAGCTCAGCTGCCCCGCCAAAGTCATCTTCAGCTCCTAGTTCTTCTGTCCAGGTTCAGCAATCAGCTCAAGGTGTGAAACGTGGCCATGGTCCTGATTTGAATGATAGAAACAACAGTAGTGGATCAACCCTTGAAGCTGGATCGCGGAACTATCAGAATGCAAAAGGTGGTAGTTTTAATTCTCATAATGTTGCTAGTGGGACACATGTTCCTGGAAATGTTGGTTCTTCTACCAAAGTTGCTGGAGTATCAGATGCAGGAGCTGGATTATCTCCAGATGCTTATCGTCATAAGCATGAAATAACTATTAATGGGGATAATGTGCCTTCTCCGTTTACATCATTTGGGTCTACTGGCCTTCCATCTGAGATACTTAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATTGTAGCCATTGCTAAAACAGGCTCAGGTAAAACCTTAGGGTATTTAATCCCTGGATTTATTCACCTGAAGCGCTGTGGTAATGACTCCAAAATGGGTCCCACTGTGTTGGTGTTGTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAGTCTTCAAGAATTTCTTGTGTGTGCTTGTATGGAGGAGCACCAAAGGGTCCTCAGTTGAGAGATATTGACCGTGGAGCAGATATTGTGGTCGCCACTCCTGGTCGATTGAATGATATTCTTGAGATGAGAAGAATCAGCCTTCATCAGGTATCTTATCTTGTGCTAGATGAGGCTGACCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGAAAAATTGTGAAAGAGGTGCCTGCACGTCGGCAAACACTTATGTTCACTGCAACATGGCCAAAGGACGTCAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAGGTTAACATAGGCAATGTTGACGAACTTGTTGCTAATAAGTCCATCACCCAGCATGTTGAAGTATTGCCACCATTGGAGAAACATAGACGATTGGAGCAGATATTGCGATCACAAGATCCAGGGTCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGGAATCTTACACGTCAGTTTGGAGCTGTTGCTATTCATGGGGATAAATCCCAGGGTGAGAGGGATAATGTGTTGAGTCAGTTTCGAACTGGGAGGTCGCCAGTTCTTGTAGCCACAGATGTTGCAGCTCGAGGATTGGACATCAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCAGGAGCTACAGGCTTGGCTTACACATTCTTTGGAGACCAGGATGCTAAATATGCCTCGGATCTCATCAAGGTCTTAGAAGGTGCAAACCAAAGAGTCCCTCCAGAACTTCGTGATATGGCTTCACGTGGTGGTGGTTTGAACCGATCCAGACGATGGGCTTCTGGACCTTCCGGCGGAAGGGGCAGTGATTCGGGATATGGTGGAAGGGGCAGATTGGGAACTGCTCCTGGCCAAGGTCGTGGATTTGACTATGATTCACAGAGGAATGAACGCGGCGGTGGCTATGGACAAGATGTTGATACCCGTAGTAAGCATGAAAGAGGATACAGTCGTAGTCGAAGTCCTGATAGAGGATCTGGCTGGGGTGATCGTAGTAAAAGTTTCAGTTGTGATCACAGCCGGAGTCATAGTCCTGATAGGCATGGAAGGGCTCCACCACATCAACATTCCTCAGGTTACAGTTTTCACCAGGCTATGATGGAACGTGGTGGAGGTGATAGAGAACGCAGTAAAAACTTCAACCGGGATGAAAGGGCTCCATCTGCACGTGAACGTTCCCCTGTCTATAGTTTTCATCAGTCAATGATGGCACGAGGTCAATCTTCCCCTCCGCCCCAACAGCGTGCCCCACCTCACAGTGGTGAGAGTGATAGAGAAGAGAGAAGTTCAAGATATGCAAGGAGGAGTCCACCAAGGTCAGACAACAGTCCTCAACAGGAGTGGAGAAGATCTCCTGGAAATAGATTGACTGATGGAAGATATGGTGGATCTCATTCTTCCTACCATGGAGAAGATCAGGAGGAAGGGATGATTCCTGATGAAGAAGGCATGATACCTCAAGATGACAGCGCATATTAG 2457 0.4693 MITIQPHFSLLFSLQPSRRPCETSIADSLAMAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPISSAAPPKSSSAPSSSVQVQQSAQGVKRGHGPDLNDRNNSSGSTLEAGSRNYQNAKGGSFNSHNVASGTHVPGNVGSSTKVAGVSDAGAGLSPDAYRHKHEITINGDNVPSPFTSFGSTGLPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRCGNDSKMGPTVLVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKDVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLPPLEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAVAIHGDKSQGERDNVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQRVPPELRDMASRGGGLNRSRRWASGPSGGRGSDSGYGGRGRLGTAPGQGRGFDYDSQRNERGGGYGQDVDTRSKHERGYSRSRSPDRGSGWGDRSKSFSCDHSRSHSPDRHGRAPPHQHSSGYSFHQAMMERGGGDRERSKNFNRDERAPSARERSPVYSFHQSMMARGQSSPPPQQRAPPHSGESDREERSSRYARRSPPRSDNSPQQEWRRSPGNRLTDGRYGGSHSSYHGEDQEEGMIPDEEGMIPQDDSAY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g01540 818 MobiDBLite consensus disorder prediction 694 716 - -
Bach8g01540 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 551 IPR027417 -
Bach8g01540 818 MobiDBLite consensus disorder prediction 745 761 - -
Bach8g01540 818 Pfam DEAD/DEAH box helicase 219 389 IPR011545 GO:0003676|GO:0005524
Bach8g01540 818 Gene3D - 173 404 IPR027417 -
Bach8g01540 818 FunFam probable ATP-dependent RNA helicase DDX17 171 403 - -
Bach8g01540 818 SMART helicmild6 454 534 IPR001650 -
Bach8g01540 818 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 346 354 IPR000629 -
Bach8g01540 818 CDD WW 52 81 IPR001202 GO:0005515
Bach8g01540 818 SMART ultradead3 214 417 IPR014001 -
Bach8g01540 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 573 IPR001650 -
Bach8g01540 818 MobiDBLite consensus disorder prediction 82 161 - -
Bach8g01540 818 SMART ww_5 50 83 IPR001202 GO:0005515
Bach8g01540 818 ProSiteProfiles WW/rsp5/WWP domain profile. 49 83 IPR001202 GO:0005515
Bach8g01540 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 400 IPR014001 -
Bach8g01540 818 FunFam ATP-dependent RNA helicase RhlB 404 576 - -
Bach8g01540 818 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 157 573 - -
Bach8g01540 818 MobiDBLite consensus disorder prediction 82 106 - -
Bach8g01540 818 MobiDBLite consensus disorder prediction 37 56 - -
Bach8g01540 818 MobiDBLite consensus disorder prediction 660 679 - -
Bach8g01540 818 MobiDBLite consensus disorder prediction 566 818 - -
Bach8g01540 818 MobiDBLite consensus disorder prediction 762 778 - -
Bach8g01540 818 ProSitePatterns WW/rsp5/WWP domain signature. 55 81 IPR001202 GO:0005515
Bach8g01540 818 MobiDBLite consensus disorder prediction 116 161 - -
Bach8g01540 818 Gene3D - 41 88 - -
Bach8g01540 818 Pfam Helicase conserved C-terminal domain 426 534 IPR001650 -
Bach8g01540 818 MobiDBLite consensus disorder prediction 628 653 - -
Bach8g01540 818 SUPERFAMILY WW domain 43 82 IPR036020 GO:0005515
Bach8g01540 818 Gene3D - 405 576 IPR027417 -
Bach8g01540 818 CDD SF2_C_DEAD 414 543 - -
Bach8g01540 818 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 195 223 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g01540 Bach-Chr8 10662726 10668239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g01540 193 572 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 1.03e-64 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g01540 K12823 - gmx:100786511 1063.14