Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g01498 ATGGCTTATCTTCCATGCTTGCTTCTTCTAGCTCTCTCTCTTTTCACTCCCAACTTGGTTTCCTCCTCAGCAGTTCAAGACCCTGAGCTTGTTGTACAGGACGTGCACAGGAGCATCAATGCCTCTAGAAGAAACTTGGGTTATTTATCATGTGGAACTGGTAACCCCATTGATGATTGTTGGAGGTGTGACCCCAACTGGGAGAGCAATCGGCAGAGGCTCGCCGATTGCGCCATTGGGTTCGGCAAGAATGCCCTCGGAGGAAAAAACGGTCGAGTCTACATCGTGACGGACTCCGGCGACGACGATCCGGTGAACCCCAAGCCGGGAACTTTAAGATATGGCATTATTCAAGATGAGCCATTATGGATCATCTTCAAGAGGGACATGGTCATCACTCTTAAGCAAGAGCTTGTGATGAACTCCTACAAGACCATCGATGGAAGGGGTGCCAGCGTCCACATTGCCGGTGGTGGGTGCATTACTGTACATTATGTGTCTAACATCATCATCCATGGCATCCACATCCATGATTGTAAGCCAACAGGGAATGCTGATATCAGAGACTCTCCTCACCATTACGGGTGGTGGACAAAATCGGATGGTGATGGTATCTCCATCTTCAATTCAAGGCATGTATGGGTTGATCACTGCTCATTGTCTAACTGTCAAGATGGACTCATTGATGCCATCCATGGATCCACAGCTATCACCATCTCCAACAACTATATGACTCATCATGACAAGGTCATGCTCTTGGGCCATAGTGACTCGTATACTCAAGACAAGGATATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGGCTTGTACAAAGAATGCCAAGGTGTAGGCATGGTTACTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGTGGTAGTGCTCAACCCACCATCAACAGTCAAGGAAACAGGTTTCTTGCACCGGATAACCGGTTCAGCAAGGAAGTAACAAAGTACGAGGACGCTCCGGAGAATCAATGGATGCACTGGAACTGGAGGTCAGAGGGTGACCTGTTCTTGAATGGAGCTTTCTTCAGGCAATCTGGTGCTGGAGCCTCTTCCAGCTACGCTAGGGCATCCAGCCTCAGTGCAAGACCATCAAACCTCGTGGGTTCGATGACCCTCACTGCTGGGACACTCAGCTGCAGAAAGGGCACCCGCTGCTGA 1212 0.4893 MAYLPCLLLLALSLFTPNLVSSSAVQDPELVVQDVHRSINASRRNLGYLSCGTGNPIDDCWRCDPNWESNRQRLADCAIGFGKNALGGKNGRVYIVTDSGDDDPVNPKPGTLRYGIIQDEPLWIIFKRDMVITLKQELVMNSYKTIDGRGASVHIAGGGCITVHYVSNIIIHGIHIHDCKPTGNADIRDSPHHYGWWTKSDGDGISIFNSRHVWVDHCSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAQPTINSQGNRFLAPDNRFSKEVTKYEDAPENQWMHWNWRSEGDLFLNGAFFRQSGAGASSSYARASSLSARPSNLVGSMTLTAGTLSCRKGTRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g01498 403 Pfam Pectate lyase 135 320 IPR002022 -
Bach8g01498 403 SUPERFAMILY Pectin lyase-like 55 394 IPR011050 -
Bach8g01498 403 SMART amb_all 129 326 IPR002022 -
Bach8g01498 403 FunFam Pectate lyase 54 396 - -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Bach8g01498 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Bach8g01498 403 PANTHER PECTATE LYASE 18-RELATED 25 401 IPR045032 GO:0030570
Bach8g01498 403 Gene3D - 54 396 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g01498 Bach-Chr8 10390609 10392321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g01498 2 403 Polysaccharide Lyase AT5G63180 73.892 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g01498 K01728 - gmx:100794814 740.725