LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01349	GAGATCAATTTGATTTTGATCATTGATGGAGGAACCAGTAGTTGTGAACAAAGGAGAAGAAGCTCTGGATTTGCCTCCAGGCTTCAGATTCCACCCCACAGATGAGGAGATCATAACTTGTTATCTAACCGAGAAGGTGATGAACAGAAGTTTCAGTGCAACTGCTATAGGAGAAGCTGATTTGAATAAGTCTGAACCTTGGGATTTGCCCAAAAAAGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAACGAGATAGGAAGTACCCTACAGGGATGAGGACAAATCGGGCAACCGAATCGGGTTACTGGAAGGCCACCGGAAAAGATAAGGAGATTTTCAAAGGGAAAGGCAACCTCGTTGGGATGAAGAAGACTCTTGTCTTCTACAGAGGGAGAGCTCCTAAAGGAGAGAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCTTACCATCTCCCTAAAGCTGCAAAGGATGAATGGGTTGTTAGCAGGGTTTTCCACAAGAACACAGATATGAAAAAGACCCCAATTCCTGGACTTCTAAGGATGAACTCCCTGAGTGATGATCTGCTGGATTACTCCACACTCCCACCTCTCATGGACCCTCATCCTCCTAATTATAGTACTGACGACGATGATTTCAAAGTGAGTACCAACCCAAGTTCATCTGCTAAAGTTCCACTACCATCATCAGACGGCTATTATCTCCCCAGCTTCTCAGTCAACAATCATCAGCTGCTGCAGCACCCTACCACCAGTAACTACAACCAAGTCAACTATGGAAACATGATAGGAAGCTCCAACATTTCACAGCCACAAATCCGAAACCAGAATCCCAGTTTCTCCTCGTTCCACCATCAGCAGAACAATATTTCACAGCAACAAGGTTTTGCATTCGCAGGTGGTTCTTCTTTCGGGGGCAATACTGACCCTCAAGCTTTTCTAAGAGCATTTGCAACAAAGAATGGATTCATGTCTGGGTTGGAAAAGCAGTGCAATGTGGAGCAATTCTCGTGTAACCAGTCGGCGGTGGTGAGCGTCTCGCAGGACACCGGAGTCAGCAATGACAGAAACACAGAGACCTCGTCGGCAGTTTCCAAGCAGCAGCAAGACATGGGAGCAAACAGGTCATTATACGAAGAGTTCGATGGTCCTTCTTCTTCAGTTGCCACCCTTTCAGACTTGGATGTGTGCCTCTGGGATGACTACTGA	1231	0.4614	MEEPVVVNKGEEALDLPPGFRFHPTDEEIITCYLTEKVMNRSFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFAYHLPKAAKDEWVVSRVFHKNTDMKKTPIPGLLRMNSLSDDLLDYSTLPPLMDPHPPNYSTDDDDFKVSTNPSSSAKVPLPSSDGYYLPSFSVNNHQLLQHPTTSNYNQVNYGNMIGSSNISQPQIRNQNPSFSSFHHQQNNISQQQGFAFAGGSSFGGNTDPQAFLRAFATKNGFMSGLEKQCNVEQFSCNQSAVVSVSQDTGVSNDRNTETSSAVSKQQQDMGANRSLYEEFDGPSSSVATLSDLDVCLWDDY	401

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach8g01349	401	Gene3D	NAC domain	25	171	IPR036093	GO:0003677\|GO:0006355
Bach8g01349	401	ProSiteProfiles	NAC domain profile.	16	166	IPR003441	GO:0003677\|GO:0006355
Bach8g01349	401	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	15	287	-	-
Bach8g01349	401	FunFam	NAC domain-containing protein 100-like	25	170	-	-
Bach8g01349	401	SUPERFAMILY	NAC domain	12	167	IPR036093	GO:0003677\|GO:0006355
Bach8g01349	401	MobiDBLite	consensus disorder prediction	346	370	-	-
Bach8g01349	401	MobiDBLite	consensus disorder prediction	195	225	-	-
Bach8g01349	401	MobiDBLite	consensus disorder prediction	209	225	-	-
Bach8g01349	401	Pfam	No apical meristem (NAM) protein	17	142	IPR003441	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01349	Bach-Chr8	9251444	9253008	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g01349	1	257	NAC Transcription Factor Family	AT5G18270	64.925	2.85e-116	340

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Bach8g01349		NAM	2e-39	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01349	-		-	aprc:113861501	539.265

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