LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g01306	ATGACCATGTACTCCCCTAACAGCAGCATTTTGGTCTCACCCAGTAGCTCCCGGTCGGTGACGGAGACCGTGAATGGTTCGCATAACTTTGTGATCAAAGGCTACTCTCTCGCCAAAGGGATCGGAGTCGGGAAGCACATAGCCAGCGAGAATTTCACCGTCGGAGGGTACCAGTGGGCCATTTACTTCTACCCGGATGGAAAAAATCCTGAAGACAATTCTGCATATGTCTCAGTCTTCATTGCGCTTGCTAGCGAGGGCACTGATGTGCGGGCACTCTTCGAGCTGACTCTGGTGGACCAGAGCGGAAACGGGAAGCATAAGGTTCATAGCCACTTCGATCGATCGCTTGAGAGCGGGCCCTATGCGCTCAAGTACAGAGGCAGCATGTGGGGCTACAAACGTTTTTTCAAACGAGCTCAGCTTGAGGCATCGACATTCCTTAAGGATGATTGCTTGAAATTAAATTGTACTGTTGGTGTTGTGATTTCTTCCATAGATTGTTCAAAATTAAACTCAATACATGTTCCTGAATCTGATATTGGAGCACATTTTGGCATGCTATTGGAGAATGAGGAAGAATCTGATGTTACTTTCTCTGTATCCGGGGAAAAGTTTCATGCACATAAACTTGTATTGGCTGCTCGGTCTCCCGTATTTGAGAGTGAGTTTTTCAATGAAGTTGAGGAAGATAATCATGAAGTAGTTGTCTCTGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTCATTTACAAAGACACTCTTATCGACGATGAAGAGCTCTTCATGTTACGTTCATCATTCTTGCCATCATTATCTGACACATTTGCTGCAAAAATGTTAGCTGCAGCAGAAAAATATGGTTTGCCAAGACTTAAACTGATGTGCGAATCTGTACTCTGCAAAGATATATCTGTAGATTCTGTTGCTTATATTCTGGCCCTCGCCGATCGTTATCATGCTACAGAATTAAAGTCCATTTGTCTAAAATTTTCTGCTGAGAACCTTGTCGCTGTGATGCAATCTGATGGCTTTGAGTATCTCAAGGAAAACTGCCCATTGCTGCAATCGGAACTACTAAAGACGGTGGCTGGGTGTGAGGAGGAATTTAGTGGGGAGGGAAAATGTCGAAGTGTTTGGGCTCAGTTTTCTGATGGTGGCGACACTAACGATAGGAGTGTAAGACAACAAACTTGGGAAAATGGAGTTGAGAGAAGTCAAAGCCTATGGGTTCAGCTTTCTGATGGTGGTAACAATAATGGTAGAAGTCCAGGACCAGAAGCATGA	1293	0.4439	MTMYSPNSSILVSPSSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASENFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYALKYRGSMWGYKRFFKRAQLEASTFLKDDCLKLNCTVGVVISSIDCSKLNSIHVPESDIGAHFGMLLENEEESDVTFSVSGEKFHAHKLVLAARSPVFESEFFNEVEEDNHEVVVSDMEPKVFKALLHFIYKDTLIDDEELFMLRSSFLPSLSDTFAAKMLAAAEKYGLPRLKLMCESVLCKDISVDSVAYILALADRYHATELKSICLKFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVQLSDGGNNNGRSPGPEA	430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g01306	430	Gene3D	Potassium Channel Kv1.1; Chain A	171	300	IPR011333	-
	Bach8g01306	430	SUPERFAMILY	POZ domain	174	304	IPR011333	-
	Bach8g01306	430	CDD	BACK_AtBPM-like	303	364	IPR034090	-
	Bach8g01306	430	ProSiteProfiles	MATH/TRAF domain profile.	25	159	IPR002083	GO:0005515
	Bach8g01306	430	MobiDBLite	consensus disorder prediction	402	430	-	-
	Bach8g01306	430	SUPERFAMILY	TRAF domain-like	22	161	-	-
	Bach8g01306	430	CDD	MATH	26	159	IPR002083	GO:0005515
	Bach8g01306	430	Gene3D	-	305	379	-	-
	Bach8g01306	430	ProSiteProfiles	BTB domain profile.	195	261	IPR000210	GO:0005515
	Bach8g01306	430	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	16	362	IPR045005	GO:0016567
	Bach8g01306	430	Pfam	BTB/POZ domain	187	304	IPR000210	GO:0005515
	Bach8g01306	430	SMART	math_3	30	142	IPR002083	GO:0005515
	Bach8g01306	430	SMART	BTB_4	195	306	IPR000210	GO:0005515
	Bach8g01306	430	FunFam	BTB-POZ and math domain 1	171	300	-	-
	Bach8g01306	430	MobiDBLite	consensus disorder prediction	402	423	-	-
	Bach8g01306	430	CDD	BTB_POZ_BPM_plant	181	303	-	-
	Bach8g01306	430	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	24	162	IPR008974	GO:0005515
	Bach8g01306	430	FunFam	BTB/POZ and MATH domain-containing protein 4	24	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g01306	Bach-Chr8	8930234	8933333	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Bach8g01306		BTB	7.9e-26	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g01306	K10523		-	gmx:100809683	763.066