Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g01161 ATGGGCAGAGGGAAGATTGAGATTAAAAAGATTGAGAATTTGAATAGCAGGCAGGTCACATTCTCCAAGCGTCGTAGTGGCTTGCTCAAGAAAGCCAGGGAATTGTCTATTTTATGTGATTCAGAGGTAGCGGTTATCATTTTCTCCAGCACTGGAAAACTTTACGAGTACTCTAGCACGAGCATGGAGAACACCCTTTCAAGATACAGCAATGGCTTGGAAGCAGATTTTGGGAATCATCCTCCTGACGAACCACCAACAGAGGTATGTCACTTTGATGTCTTCATGAACATTATTGATTATTTCTACATTTTTGAAAGGATGTTGGGTAAAGAGCTTGATGGATTGAGCTTGAAAGAGCTGCAACACCTAGAAAATCAACTTAGTGAAGGGGTACTGTCTGTAAAAGACAAGAAGGAACAAGTGCTTCTAGAGCAGCTTAGGAGGTCTAGACTACAGGAGCAAAAGACAATGATGGAGAATGAACTTCTGCGTAAACAACTTGAGGAGATGCAAAATATGACAAAGACACACTTCCTTGAATTCAGTCCTCTAGATAGACCGTTTTCTATTAACAAAGCAAACCCTGTTTTCAATTATGTTTCAGAGGAAAACGAGCTCTCAGACACTTCCTTACAGTTGGGGTATGTCATCACCTACATTAACATGAGAAGATCCCTTTTCACCAGCGCTGTTTAA 699 0.4092 MGRGKIEIKKIENLNSRQVTFSKRRSGLLKKARELSILCDSEVAVIIFSSTGKLYEYSSTSMENTLSRYSNGLEADFGNHPPDEPPTEVCHFDVFMNIIDYFYIFERMLGKELDGLSLKELQHLENQLSEGVLSVKDKKEQVLLEQLRRSRLQEQKTMMENELLRKQLEEMQNMTKTHFLEFSPLDRPFSINKANPVFNYVSEENELSDTSLQLGYVITYINMRRSLFTSAV 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g01161 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Bach8g01161 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 Coils Coil 149 174 - -
Bach8g01161 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 Pfam K-box region 107 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach8g01161 232 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Bach8g01161 232 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bach8g01161 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Bach8g01161 232 ProSiteProfiles K-box domain profile. 78 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach8g01161 232 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bach8g01161 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach8g01161 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g01161 Bach-Chr8 7771646 7774056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g01161 1 215 MADS-box Gene Family AT5G13790 49.327 8.31e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach8g01161 K-box 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g01161 - - gmx:100792278 298.516