Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00962 ATGGCTACTTTCTCTCTCTACTCTCATTTCCTTCTATCGAGGACACCTTCAGATTTGGCACTTTATGACCGCATTTCCCAGAGGCGACCTCTTGCAATTCCGAATTGTCTGTTCTTCAAAGGATGCGGCTTCCCTGACAACATCCCATTGTTGTTTACTTCGAAAGCCCTAGAGAGGCAGGTAGAGAGGAGACTAGCAAAGATGCAGATATTCGTCAAAACATTAACTGGGAAGACCATAACCCTCGAGGTCGAGAGCAGCGACACTATCGACAATGTCAAGGCTAAGATACAAGACAAAGAAGGTATTCCACCGGATCAGCAGCGTTTGATATTCGCGGGCAAGCAGCTCGAAGATGGCCGAACCTTGGCTGATTATAACATTCAAAAGGAGTCTACGCTTCATCTTGTGCTGAGACTTCGTGGAGGTATCATAGAGCCTTCATTGATGGCTTTAGCTCGCAAGTACAATCAAGATAAGATGATCTGCCGCAAGTGTTACGCTCGTCTACATCCAAGGGCTGTAAACTGTCGGAAGAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAAATTCTGGATGATATGGTTTGTCTAATTGTGAAATTGAGTATCCCGATGTTTATTATACGTCAGTACTACTGATTGTTTCTGGTGTTAGCTAATGTTGAATGCTTCTGGACCTCAAAATTATTCAATTCTAGTATGGACATCATAA 733 0.4338 MATFSLYSHFLLSRTPSDLALYDRISQRRPLAIPNCLFFKGCGFPDNIPLLFTSKALERQVERRLAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00962 195 Gene3D - 147 195 IPR038587 -
Bach8g00962 195 ProSitePatterns Ubiquitin domain signature. 94 119 IPR019954 -
Bach8g00962 195 FunFam Ubiquitin-60S ribosomal L40 fusion 68 145 - -
Bach8g00962 195 SUPERFAMILY Zn-binding ribosomal proteins 143 194 IPR011332 GO:0006412
Bach8g00962 195 ProSiteProfiles Ubiquitin domain profile. 68 143 IPR000626 GO:0005515
Bach8g00962 195 SMART Ribosomal_L40e_3 144 195 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bach8g00962 195 PRINTS Ubiquitin signature 120 141 IPR019956 -
Bach8g00962 195 PRINTS Ubiquitin signature 78 98 IPR019956 -
Bach8g00962 195 PRINTS Ubiquitin signature 99 119 IPR019956 -
Bach8g00962 195 Pfam Ribosomal L40e family 145 194 IPR001975 GO:0003735|GO:0005840|GO:0006412
Bach8g00962 195 CDD Ubl_ubiquitin 68 143 - -
Bach8g00962 195 Pfam Ubiquitin family 70 141 IPR000626 GO:0005515
Bach8g00962 195 PANTHER UBIQUITIN 68 154 - -
Bach8g00962 195 SMART ubq_7 68 139 IPR000626 GO:0005515
Bach8g00962 195 SUPERFAMILY Ubiquitin-like 67 143 IPR029071 -
Bach8g00962 195 Gene3D - 61 146 - -
Bach8g00962 195 FunFam ubiquitin-60S ribosomal protein L40 146 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00962 Bach-Chr8 6371781 6375831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00962 68 195 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.30e-91 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00962 K02927 - pavi:110749633 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00962 8 6371781 6375831 Bach8g00962 8 6371781 6375831 ECH