LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g00905	CAATCACTGAATCAGATTGCGATTTGCAGCAAAACCCAATCTGAGCCCACTCAACTCCTTCTCCGGTCAATCTTCAATGGCCTGCCACGAACATCAATGTCACTATTCCCGTATAACAAGAAGAAGGACAAGCCATGACCCATTGACCCTCCACCTCCTTTCGACCCTTTTGAGATTTTTTATCGAACATCTTGTCGGCAATACACTCCTATTACCTCAGAAAACATATAAAAACCTCGGGAAATCATTTCTGTTGCCGACCAGACTATTCTATGTTGTCAAACTTACTCTTCCAGGTTCTTCTATCTGTTGAACTAGTACACTTGTTGTGGTCCGAGAATCAAAATGAACCCAAACGACCCAGGTTATTCAAAATCTCCGACAAGATGTTCTGGTAAAGCTCCGGATGATTCTTCGTCATCATCTCGGTTGGAGAAGGGGACAGTTGGATTGTCCTCTATGAAGCATGAAATGTCAGAATCTTTATCCAATCCTCAATTATTTGTTTCAGCTCCACAATTCGGAGATACCTCGGCTAGTCTTTCCATAGCAGACATTGGCCTTTTGAGGGAGTTTGAAGCATCATCAACTATGAAGCCGGTGTCTTCCACTGAATTGATTGCAACTAGCGTTGAGTTGGAGAACGTTGGTGTGCCTCAGCCGCTTGAGTCTTTACAGGGGAATCAAGTTCCACCATTTCTATCGAAAACTTTCGATCTTGTGGAAGATCCATCGCTTGATCCGATTATATCTTGGAGCTTAACAGGTGGGAGTTTCGTGGTATGGGACCCATTGGAGTTTCCAAGAATCATCTTGCCACGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGCTAAATACTTATCGAGGGAAAAGACATCTGTTGAAGAACATCCAAAGGCGCAAGTCACCTCAATCCCAGCAGGTTGGTAGCTACATTGGGCCATTTACTGAAGCAGGGAAGCCTGGAGTTGAGGTTGAGGTGGAAAGACTGAGAAAAGAGAAGAGTATGTTAATGCGAGCGATGGTTGATTTGCAGCAACAGCAGCGAAGGACAGTTCACCATGTGGGAGAAGTGAACCAAAGGCTCCAGTCTGCAGAGCAGAGACAGAAACAAATGATGTCTTTCTTGGCAAAGTTGTTCCAAAACCCAGCTTTTTTAGCTCGACTTCTGCAAAAGAAGGAACAAAAAAATGTAGGTTCTTCTAGAGTGAGAAGGAAGTTTATCAAGCAGCACCAACATGATGCAGCAGGGACATCAGATTCTTTGGGGGACGGGCAGATAGTAAGATATCAACCCGATTGCAGACATATAGCCTTACCTTCTGAAACACCAGAACTAAATCCGGTTTCTAGAGATAAGTCTTCTCAATACCTTTCGCAGGGTTTGGCAGGAGAACTATGTTCAGGTACAGAAAATCCGAATTTGGAATTTGAGACTTTTGCATCAGATGAAATTGCTGTAGCCCATGAGACGATGGCAATGCCAGAGATGGGAGGAGAAGGGTCAACAAGCTTAGGACTTGAAGATCCCCTTTTCAAAGGAAAAATCCTCATGAGCCCAGAACAAGAAGTTATCCCACAGCATTTTGTCTCTTTTCCAGACAATTTGACCGAGGAGAACGCCTTTCCAGAGTTTTCCCTACCTGGAACTGAAAGCATCATCAAACAAGAAGATATATGGAATCTAGGCTCTAGTGGTAGCGGTGCTGCTTCTGGATCTGGGAATGAGCTGTGGGAAAATCCAATCAATTATGAGGTGCCAGAATTAGGAGTGACAAGTGGTATGTCAGACATCTGGGATATGAGCTCTTTGCAAGTTAGTGGAAGTTTGGGTATTGACAAGTGGACAACTGATGATTCCCTTCCAGAAGAAGCAGAAAGTCAAAGCTGGTCAGCCAAAGATGATAGATCTAAGAATATTGATCCATAGGGCATCATTTGCTTTTGCACTTACCGCCCTTTGGACACTTACCATATTTAGTTCCTAGGGTTTATATAATTAAATGGTTTGATTTATAAGGAC	2034	0.4336	MNPNDPGYSKSPTRCSGKAPDDSSSSSRLEKGTVGLSSMKHEMSESLSNPQLFVSAPQFGDTSASLSIADIGLLREFEASSTMKPVSSTELIATSVELENVGVPQPLESLQGNQVPPFLSKTFDLVEDPSLDPIISWSLTGGSFVVWDPLEFPRIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEYFQRGKRHLLKNIQRRKSPQSQQVGSYIGPFTEAGKPGVEVEVERLRKEKSMLMRAMVDLQQQQRRTVHHVGEVNQRLQSAEQRQKQMMSFLAKLFQNPAFLARLLQKKEQKNVGSSRVRRKFIKQHQHDAAGTSDSLGDGQIVRYQPDCRHIALPSETPELNPVSRDKSSQYLSQGLAGELCSGTENPNLEFETFASDEIAVAHETMAMPEMGGEGSTSLGLEDPLFKGKILMSPEQEVIPQHFVSFPDNLTEENAFPEFSLPGTESIIKQEDIWNLGSSGSGAASGSGNELWENPINYEVPELGVTSGMSDIWDMSSLQVSGSLGIDKWTTDDSLPEEAESQSWSAKDDRSKNIDP	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g00905	549	ProSitePatterns	HSF-type DNA-binding domain signature.	157	181	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	104	342	IPR027725	-
	Bach8g00905	549	SMART	hsfneu3	114	207	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	Coils	Coil	234	254	-	-
	Bach8g00905	549	MobiDBLite	consensus disorder prediction	519	549	-	-
	Bach8g00905	549	Pfam	HSF-type DNA-binding	118	207	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	MobiDBLite	consensus disorder prediction	1	34	-	-
	Bach8g00905	549	SUPERFAMILY	"Winged helix" DNA-binding domain	113	207	IPR036390	-
	Bach8g00905	549	MobiDBLite	consensus disorder prediction	535	549	-	-
	Bach8g00905	549	Gene3D	-	110	208	IPR036388	-
	Bach8g00905	549	PRINTS	Heat shock factor (HSF) domain signature	156	168	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	PRINTS	Heat shock factor (HSF) domain signature	118	141	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	PRINTS	Heat shock factor (HSF) domain signature	169	181	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach8g00905	549	FunFam	Heat stress transcription factor B-4	110	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g00905	Bach-Chr8	5987029	5989990	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g00905	92	526	HSF	AT5G03720	44.170	1.86e-102	313

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bach8g00905		HSF_DNA-bind	6.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g00905	K09419		-	qsa:O6P43_005885	630.557