Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00879 ATGGCGGTTCCTTCGACGGTCGCCGCAGGTCCGGCTTCGCTTTACGTCGGCGACCTCCTACCTGACGTCACCGATGGTATGCTGTTTGATGCATTCTCCGAGTTCAAGAGCCTTGCATCTGTTCGGGTCTGTAGGGACTCCTCAACGGGCAGGTCACTCTGTTACGGCTACGTCAACTTCATCTCCCCACAAGACGCACGAATTGCTATTGAGGTGAAGAACCATTCTACATTGAATGGGAAAGTGATACGGGTCTTGTGGTCAGATCGTGATCCTGATTCAAGGAAAGCTGGCATCGGGAATGTGTTTGTTAAGAATTTGGCTGAATCAATAGATAATGTGGGATTAGAAGATTTGTTTCAAAAATTTGGGACTATTTTGTCGAGCAAAGTTGTCATGTCTGATGACGGTAAGAGCAAAGGGTATGGTTTTGTTCAATTTGACTCTGAGGAATCTGCAAACGCTGCCATTGACAAGTTGAATGGATCTATTGTTGGAGATAAGCAGATATACGTTGGGAAATTTGTCAAAAAAAGTGACCGCATTTTGCCCAGCCCTGACGCTAAATACACGAACTTGTACATGAAAAATTTGGACCCACATATCACAGAAGAGCTTCTGCAGGAAAAGTTCTCGTCTTTTGGTAAAATTGTGAGCTTAGTTCTTGCAAAGGATGACAATGGGCTATCGAAAGGTTTTGGCTTTGTGAACTTTGATAACCCAGGTGATGCTAGACGGGCGCTGGAAGCAATGAACGGATCACAGTTAGGCTCGAAGATGATATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATATTGCACCATCAGTTTGAGGAGAAACGTAAGGAACAGATTTTGAAGTATAAGGGGTCAAACGTTTATGTGAAGAATATTGATGATGATGTTACTGATGACGTACTGCGAGATCATTTTAGTGCATGTGGCACGATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGACAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTGAGGATGCCAATAAAGCTGTGAACACTTTTCACGGTTGTATGTTTCTTCGTAAACCACTATATGTTGCTATTGCTCAGAGAAAGGAGGATAGACAAGTGCAACTGCAGCTCCAGTTTGCACAGAGATTAGCGGGCTTAGCTGGACCATCAACTGCTGTTATCCCTGGTGGATATCCTCCATACTACTATACTGCTCCTGGTGTTGTTTCACAGGTGCCTCCTCGTCCTGGTCTAATGTATCAACCTCTGGGATTGAGGCCAGGATGGAGGGCCAATGGCTTTGCGCCTACCAGACCATCCTTTCAACAGTCACCAGTCCCTGTTGCTTCGAGTACTGCAAGACAGCAAAGGCAAAACAGAGGCAGGATGAACGGATATACAATGTCACAGGGAAACACTCATTCTGGTACATATATGCCACAGGCGCCGCAGCCTTCTCAGGCAGTGTCGTCAAAAGAATCAACTACTCAGCAGCGGACTGCGCAGGCTAAGTATGTGCCCAGTGGGCGCCAGCGTGAGATGGAAAAAGGATCTGGAGTCTCATCCATTAGTTCTAACTCTGCTGGAGGTTCCCAGGGATCAGAAATGCTCCATAGCATGCTAGCTGCTGCTTCTCCTGAGCAGCAGAAACAGATACTTGGCGAGCATCTTTACCCACTTGTGGAGAAACTCAAGCCTGGCTTAGCAGCAAAGATTACCGGGATGCTTCTGGAGATGGACAATGGAGAATTGCTGCTTCTCTTGGAATCTCCGGAGTCTCTGTCTGCCAAGGTGGAAGAAGCTGTGCAAGTGCTGAAGAACTCCAAGACCAAAGTTTCTGGCCAGGATGTACTTCATCCCAATTACCTTTCTGCTGAGGTTGCAGTGAACTGA 1905 0.4672 MAVPSTVAAGPASLYVGDLLPDVTDGMLFDAFSEFKSLASVRVCRDSSTGRSLCYGYVNFISPQDARIAIEVKNHSTLNGKVIRVLWSDRDPDSRKAGIGNVFVKNLAESIDNVGLEDLFQKFGTILSSKVVMSDDGKSKGYGFVQFDSEESANAAIDKLNGSIVGDKQIYVGKFVKKSDRILPSPDAKYTNLYMKNLDPHITEELLQEKFSSFGKIVSLVLAKDDNGLSKGFGFVNFDNPGDARRALEAMNGSQLGSKMIYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNVYVKNIDDDVTDDVLRDHFSACGTITSVKVMRDDKGTSKGFGFVCFSTPEDANKAVNTFHGCMFLRKPLYVAIAQRKEDRQVQLQLQFAQRLAGLAGPSTAVIPGGYPPYYYTAPGVVSQVPPRPGLMYQPLGLRPGWRANGFAPTRPSFQQSPVPVASSTARQQRQNRGRMNGYTMSQGNTHSGTYMPQAPQPSQAVSSKESTTQQRTAQAKYVPSGRQREMEKGSGVSSISSNSAGGSQGSEMLHSMLAAASPEQQKQILGEHLYPLVEKLKPGLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHPNYLSAEVAVN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00879 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Bach8g00879 634 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 610 IPR006515 GO:0003723
Bach8g00879 634 PANTHER RNA BINDING PROTEIN 13 90 - -
Bach8g00879 634 Coils Coil 263 283 - -
Bach8g00879 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bach8g00879 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Bach8g00879 634 CDD RRM4_I_PABPs 293 371 - -
Bach8g00879 634 SMART poly_2 549 612 IPR002004 GO:0003723
Bach8g00879 634 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Bach8g00879 634 SUPERFAMILY RNA-binding domain, RBD 291 383 IPR035979 GO:0003676
Bach8g00879 634 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bach8g00879 634 MobiDBLite consensus disorder prediction 436 538 - -
Bach8g00879 634 Gene3D - 535 625 - -
Bach8g00879 634 MobiDBLite consensus disorder prediction 440 509 - -
Bach8g00879 634 FunFam Polyadenylate-binding protein 277 385 - -
Bach8g00879 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Bach8g00879 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bach8g00879 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Bach8g00879 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 363 IPR000504 GO:0003723
Bach8g00879 634 FunFam Polyadenylate-binding protein 4 99 - -
Bach8g00879 634 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 537 614 IPR002004 GO:0003723
Bach8g00879 634 FunFam Polyadenylate-binding protein 101 181 - -
Bach8g00879 634 Pfam Poly-adenylate binding protein, unique domain 544 609 IPR002004 GO:0003723
Bach8g00879 634 SUPERFAMILY PABC (PABP) domain 479 620 IPR036053 GO:0003723
Bach8g00879 634 Gene3D - 101 181 IPR012677 -
Bach8g00879 634 MobiDBLite consensus disorder prediction 519 538 - -
Bach8g00879 634 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bach8g00879 634 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bach8g00879 634 SMART rrm1_1 192 264 IPR000504 GO:0003723
Bach8g00879 634 SMART rrm1_1 295 367 IPR000504 GO:0003723
Bach8g00879 634 FunFam Polyadenylate-binding protein 182 276 - -
Bach8g00879 634 SMART rrm2_1 295 367 IPR003954 GO:0003676
Bach8g00879 634 SMART rrm2_1 192 264 IPR003954 GO:0003676
Bach8g00879 634 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bach8g00879 634 Gene3D - 182 276 IPR012677 -
Bach8g00879 634 Gene3D - 277 380 IPR012677 -
Bach8g00879 634 Gene3D - 5 100 IPR012677 -
Bach8g00879 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bach8g00879 634 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Bach8g00879 634 FunFam Polyadenylate-binding protein 535 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00879 Bach-Chr8 5792822 5797371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00879 12 632 Eukaryotic Initiation Factors Gene Family AT2G36660 53.760 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00879 K13126 - qsa:O6P43_010206 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00879 8 5792822 5797371 Bach1g02446 1 35933581 35938676 BWGD
Bach8g00879 8 5792822 5797371 Bach8g00879 8 5792822 5797371 ECH