Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00428 ATGCTGGGAGAATCTGGAGCTGATGACGGGCAAATAAAAAGTATTAGCAGCGATTTCAGACTAATCGAAGGAAAAATGAGTAGACGTGGAAGCAGAACTGTGTACGTTGGAAATCTACCTGGTGATATTCGCGAAAGAGAAGTCGAAGATTTGTTTGTCAAGTATGGACACATAACTCATATTGACCTAAAGGTTCCTCCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTCTCAAGACGCTGAGGATGCAATTCGTGGTCGTGATGGTTATGATTTTGATGGGCACCGATTACGGGTAGAGCCTGCACATGGTGGACGCGGTCATTCATCATCAAGAGATCGGCATAGTAGTCACAGCAATGGTCGGGGTGGACGAGGTGTATCTAAGCGCTCTGAATATCGTGTCCTTGTCACTGGGTTGCCATCTTCTGCTTCCTGGCAGGATCTTAAAGACCACATGCGGAAGGCTGGGGATGTTTGTTTCTCCCAAGTTTTCCATGACGGAAGAGGTACAACTGGGATTGTAGATTACACAAACTATGATGACATGAAATATGCGATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCTAGAGCTTTTGTTCGTGTGAGGGAGTATGATTCTAGGCGTGACTCCTCTAGAAGCCCTAGTCGTGGCCGATCCTATTCTAGGGGCAGAAGCTATAGTCGCAGCCGTAGCCGTAGTAACAGTCGGGGCCACAGCCAAAGCAAATCTCCAAGGGGAAAATCTTCCCATCGTTCACCTGCCAAATCTCCTTCAAAATCTGTTTCTCGCTCACGCTCTAAGTCAAGGTCCCGTTCTTTATCAGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGGACTTGGTTGGATTTGTTCAATTTCCTGCATCTCAATTTGTTGTGGAGATTGGGAACAAAGGAGATCATGGATTGCTATATTAGAGCTGGATATCAAGATCAAGATCCAGATCTCCATTGCCTTTGCGCCATAAAAGCCCAAAAAGACGCAGTGCCAGCAGGAGCCCCAGTAGGAGCAGAAGCAGAAGCAAGAGTTTGTCTCGGTGAGCACTAG 1101 0.4614 MLGESGADDGQIKSISSDFRLIEGKMSRRGSRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRGGRGVSKRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAFVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSNSRGHSQSKSPRGKSSHRSPAKSPSKSVSRSRSKSRSRSLSGYGYLQQTGNWKLGTWLDLFNFLHLNLLWRLGTKEIMDCYIRAGYQDQDPDLHCLCAIKAQKDAVPAGAPVGAEAEARVCLGEH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00428 366 CDD RRM1_SF2_plant_like 33 103 - -
Bach8g00428 366 MobiDBLite consensus disorder prediction 88 135 - -
Bach8g00428 366 Gene3D - 23 133 IPR012677 -
Bach8g00428 366 CDD RRM2_SF2_plant_like 136 211 - -
Bach8g00428 366 MobiDBLite consensus disorder prediction 213 281 - -
Bach8g00428 366 MobiDBLite consensus disorder prediction 88 132 - -
Bach8g00428 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 101 IPR000504 GO:0003723
Bach8g00428 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 200 IPR000504 GO:0003723
Bach8g00428 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 107 IPR000504 GO:0003723
Bach8g00428 366 MobiDBLite consensus disorder prediction 258 281 - -
Bach8g00428 366 FunFam serine/arginine-rich splicing factor SR34A-like 136 213 - -
Bach8g00428 366 SMART rrm1_1 137 206 IPR000504 GO:0003723
Bach8g00428 366 SMART rrm1_1 33 103 IPR000504 GO:0003723
Bach8g00428 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Bach8g00428 366 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 26 135 - -
Bach8g00428 366 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 24 280 - -
Bach8g00428 366 SUPERFAMILY RNA-binding domain, RBD 31 202 IPR035979 GO:0003676
Bach8g00428 366 Gene3D - 135 213 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00428 Bach-Chr8 2733213 2739205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00428 27 220 Eukaryotic Initiation Factors Gene Family AT4G34110 25.616 3.34e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00428 K12890 - gmx:100789847 357.451