Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00348 ATGTCGAAGAGGAAGTTCGGATTCGAAGGCTTTGGCATGAACCGCCAAGCAACCTATAATTTTGAGCGATCTCAAGCCCCTCAACGACTCTATGTCCCTCCTTCTTCACGTCACGGGCATGACAACTACGAGGATACCGACCTTGACAACATCGAGTACGACGATAATGATACTGCCAAGGACGGGAGCGATAATAATGGCAGCAACAATGGTGACAATGAAGAAGAGATTGACCCCCTTGATGCTTTCATGGAAGGAGTTCATGAAGAAGTGAAGGCTGCGCCGCCTCCGAAGCCGAAGGAGAAGGCAGAGGACAGGTATAGGGATGATGATGAGGACGATCCGATGGAGAGCTTTTTGAGAGCGAAGAAGGACTTAGGATTGACCCTGGCGTCCGAGGCTCTTCATGCTGGATATGATTCTGACGAGGAGGTTTATGCTGCTGCAAAGGCTGTTGACGCTGGTATGGCAGAGTATGATTCTGATGATAATCCCATCATTGTCGATAGGAAGAAAATTGAGCCAATACCAGCTCTGGATCACAGTTCTATTGACTACGAGCCATTTAGTAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGCGACCAAGATGTTGCTGAATATCGGAAGAGTTTAGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCCGTTAAGACATTTGAGGACTGTGATTTTTCTCCAGAACTTATGAATGCTATAAAAAAACAAGGTTATGAGAAGCCGACATACATACAGTGCCAAGCCTTACCAGTTGTTCTTTCTGGTAGGGACATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTACATATCATGGATCAGCCTGAACTTGCGAAGGAAGAGGGTCCTCTTGGAGTAATCTGTGCACCTACTAGAGAATTGGCACATCAGATATACTTGGAGTCCAAGAAATTTGCAAAAAGTTATGGGATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAGCTTGATCAATTCAAAGAACTTAAGGTAGGCTGTGAGATAGTCGTTGCAACTCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCTCTTACAATGATGAGAGCAACATACTTGGTTCTTGATGAAGCTGATCGAATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATTCTCGGTCAAATTAGACCGGACCGCCAAACTTTACTTTTTTCCGCAACAATGCCACGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTATTAGAGTAACAGTTGGGGAAGTTGGAATGGCAAATGAGGATATTACTCAAGTTGTTCAAGTAATGCCTTCTGATGTGGAGAAATTGCCGTGGGTTTTGGAGAAGCTGCCTGGAATGATTGATGAAGGCGATGTCCTGGTATTTGCTTCCAAAAAGGCTGCTGTGGATGAAATTGAATCACAATTGGCTAATAGAGGCTTTAAAGTTGCAGCTCTTCATGGTGATAAAGATCAAGCTTCCCGGATGGAAATTTTGCAAAAGTTTAAATCTGGTCTTTACCATGTGCTTATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATAAAGTCTATCAAGTCAGTGGTAAACTTCGACATTGCAAAAGATATGGACATGCATGTTCATCGCATTGGTAGAACAGGTCGTGCTGGGGATAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGTTTAATTGCAGCTGGGCAGAATGCGTCTATGGAGTTAATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAGGAAAGGTAGAGGGAGAGGCGGTGGTGCTGGGGGTCGAGGTGTTCGGGGAGTGGATTATGGCTTGGGTATTGGATATAATCCGGAGTCCAACAACACTTCATCTAACACGGTTCCTAGTCGATCTGCCGCCGTAAATTCACTGCGAACAGGAATGATGGCGCAATTCAGGAGTAGCTTTGTTGCTGCTTCAAATTCTCAAAATCAAGGCTTCAGTAACAGTACAAGCATGCCTGCTAATAAGAGACCAGCACTCCCTGGCTTTGTATCCGGTGGATCAATAGGTGGGGATATAAATACTACTCAGTCTACTGCTGCATTCAGTCCTGCTACATCAGCAGTAAATGGCACATTTGGAGTTAATGCTAGTCAGAAGAACACTGAGAGTTCTAGACCTAGAGAAAGGCGGAGGCCATCAGGTTGGGATACATAGATTATAGCGTAAAATGGCACCATTTGTCACTTGTAAGTCTTCAAATGATTTTCTTCGTTTTTTTTGTATTTTTAATATTCTAGTTTCATGTCCTGTATTTATTTTTAGCCTCCA 2424 0.4356 MSKRKFGFEGFGMNRQATYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDTAKDGSDNNGSNNGDNEEEIDPLDAFMEGVHEEVKAAPPPKPKEKAEDRYRDDDEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMAEYDSDDNPIIVDRKKIEPIPALDHSSIDYEPFSKDFYEEKPSISGMSDQDVAEYRKSLAIRVSGFDVPKPVKTFEDCDFSPELMNAIKKQGYEKPTYIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPLGVICAPTRELAHQIYLESKKFAKSYGIRVSAVYGGMSKLDQFKELKVGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSILGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVQVMPSDVEKLPWVLEKLPGMIDEGDVLVFASKKAAVDEIESQLANRGFKVAALHGDKDQASRMEILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNASMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGGAGGRGVRGVDYGLGIGYNPESNNTSSNTVPSRSAAVNSLRTGMMAQFRSSFVAASNSQNQGFSNSTSMPANKRPALPGFVSGGSIGGDINTTQSTAAFSPATSAVNGTFGVNASQKNTESSRPRERRRPSGWDT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00348 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Bach8g00348 769 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Bach8g00348 769 MobiDBLite consensus disorder prediction 17 31 - -
Bach8g00348 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Bach8g00348 769 SMART helicmild6 488 569 IPR001650 -
Bach8g00348 769 SMART ultradead3 248 450 IPR014001 -
Bach8g00348 769 MobiDBLite consensus disorder prediction 81 114 - -
Bach8g00348 769 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 193 609 - -
Bach8g00348 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 602 IPR027417 -
Bach8g00348 769 CDD DEADc_DDX42 240 436 - -
Bach8g00348 769 MobiDBLite consensus disorder prediction 614 640 - -
Bach8g00348 769 Gene3D - 192 436 IPR027417 -
Bach8g00348 769 MobiDBLite consensus disorder prediction 743 769 - -
Bach8g00348 769 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Bach8g00348 769 CDD SF2_C_DEAD 447 579 - -
Bach8g00348 769 MobiDBLite consensus disorder prediction 1 114 - -
Bach8g00348 769 Gene3D - 437 613 IPR027417 -
Bach8g00348 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Bach8g00348 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Bach8g00348 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Bach8g00348 769 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Bach8g00348 769 MobiDBLite consensus disorder prediction 754 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00348 Bach-Chr8 2305971 2310570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00348 226 579 Eukaryotic Initiation Factors Gene Family AT3G19760 32.773 4.15e-60 207