LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g00316	CTTCGCGCACTTTCCGACATTCACTTAACGCGGTTTACCTGCCGCCGATCTGCTTTTCCTTTCAACACCGATTTCAGACTTTCACCTGGATGGCAGGAGCTCCTTGAACTTCAGCTCAGCTTGATTTTATTTGACTTTGGAGGTTTGGTAATTAGTTGGTCATTATTGGCTATGTGGGTTGCGCTTAATTGGAATCATGGTAGTGCAGGTGTGGTGTTTCTGGACTTTTGGGGAAAAAAATGAAGCTGATTAGGTCCAATTATGTGCTGGTGATTTGATATTTAAACTTAATTTTGCATTTTGAGTTATAATTTTTGGATTTAAAAGATTGTACTTTTTGGCTGTGAGTATGGAGGCCAGATTTGGCACAGAAGCTTTTCCCTTTTACGGCGTGGGTTCCTCAGATTTGCGTGCTGTGGGAAAGAGGCCCGTGGAATGGGATTTAAATGAGTGGAAGTGGGATGGTGATCTCTTCATAGCTACTCCTCTGAATCCCGAGCCAGCAGATATTGTGGGTCAACAATTTTTCCCTCTTGGTTCTAGGATTCCCACGGCTGGGGTTTCCTCTAACAGTTCATCATCTACCTCTGATGAGGTAAATCTTGGGATTGACAAGGGTAAGAAGGAAGGGGAGAAGAAAAGGAGAGTGATTGTGGTTGAAGATGACTGTTTGAATGAGGAAGCAGGTAGCCTCAGCTTAAAGCTTGGGGGTAATGGTTCCCCAGTTGCTGATAGGGAGATAGCAAGTTGGGAAGGAACAAATGGGAAGAAAACCAGATTAACTGGAGGTACTTCAAATCGAGCGGTGTGTCAGGTGGAGGACTGCGGTGCAGATCTGAGCAACGCTAAAGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCTAGTAGGGCTCTTGTCGGCAATGTAATGCAGCGGTTCTGTCAACAATGTAGTCGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCATAATAAACGAAGGAGGAAAACAAATCATGATGTTGTTCCGAATGGAAGTTCACTGAACGATGATCAGACTAGTAGCTATCTGTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTAATAGGTCAGATCAGACCACAGATCAGGATCTGCTGTGTCATCTTCTAAAGAGTCTTGCTGGTCAAAATGGTGAACAAGGGGACAAAAACTTGTCTGACCTTTTGCGGGAACCTGGCAATTTGTTGAAAGAAGGGACATCTTCTGGAAAGTCAGAGATGGTTTCTACTTTATTATCAAATGGTTCTCAAGGCCTCATAAGACAACATCAAACAGTATCTATGACTGAAATGCAACATCAAGTGATGCATACACATGATGCCAGGGCTTCTGATCAACAAACCACATCTTCCACAAAACCTAGCATTTCAAACAGTCCTCCAGCCTACTCAGAGGCTAGAGACAGTACTGCTAGACAGATCAAGATCAATAACTTTGATTTGAATGACATATATATTGACTCAGATGATGATGGCATGGAAGATATGGAAAGATTGCCTGCCTCTGTGAATCTTGGGACTGGCTCTCTTGATTACCCTTGGGCACAACAAGATTCTCTCCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCTCAATCGCCTTCTAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTTTTACTTAGAGCACAGATTCTTGACTGGTTATCGCACAGTCCTACTGACATGGAGAGCTACATACGACCGGGTTGTGTTGTTCTGACTACTTATCTGCGCCAAGCTGAAGCTGTGTGGGAGGAAATTTGCTATGATCTGACTTCCAGTTTGAACAGGCTTCTGGAGGTCTCAGATGATGCTTTCTGGAGAACTGGATGGGTTTACATAAGGCTGCCGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAGATACTTCCTTACCTTTCAGAAGTAACAATTATTGTAAGATTTTGAGTGTTAGTCCGATAGCCGTACCAGCATCCAGGAGGACTCAATTTTCAGTTAAGGGCATTAACCTGATTCGCCCTGCCTCCAGGTTATTGTGCGCACTAGAAGGGAAATATCTGGTCTGTGAAGATGCGCATGAATCCACAGCCAAAAGAAATGAAGATGCTTACGAGTCAATGGATGGCCTTGATTGCTCTAAAGATGTTCATGAGCTCCAGTGTGTCCAGTTTTCCTGTGCTATCCCTGTGCCAAATGGAAGAGGATTTATTGAGATCGAGGACCAGGGTTTGAGCAGCAGTTTTTTCCCTTTTGTAGTTGCAGAGGAGGATGTTTGCTCAGAAATCTGCATACTTGAGAATCTACTAGAATCAAGTGAAACTGATTTAGATGTTGGAGGAGCTGGAAAAACCAAAACTAAGAGCCAAGCCATGGATTTTATTCATGAAATGGGGTGGCTTCTCCATAGAAGCCAATTGAAATCTAGGCTGGTTCACTTAAATTCTAATACGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTCATGGAGTTCTCTATGGATCATGATTGGTGTGCAGTAGTGAGGAAACTCTTGAACCTACTACAGGATGGAATTGTGGATAATGGTGATCAACCTTCCCTTTATCTTGCACTTTCAGAGATGGGCCTTCTTCATAGAGCTGTAAGGAGAAATAGCAGGAAGTTGGTTGAACTGCTTTTGAGATATGTCCCTGAGAATATTTCTGACAAACTAGGACCTGACAACACGGCACTGGTTGATGGAGAAAGTCAGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCAGGTTTGACACCTCTCCACATAGCAGCTGGAAAAGATGGTTCTGAAGAAGTACTGGATGCTTTAACTGATGATCCGTGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGATACCACAGGCTCCACACCTGAAGATTATGCGCGATTACGTGGCCATTATACCTACATTCACCTAGTTCAGAAGAAAATTAACAAGAAACAAGTGGCAGCAGCTCATGTGGTGGTTGAGATTCCCAGTGAACAACCAGATAGCAGTACAAAGCAGAAGCAAAACGAGTTGACAACTAGCTTTGAGATTGGAAAGGCTTCAGTAAGAAATGTCCATGGGCACTGCAGACTTTGTGATCATAAATTGTCTTGTAGAACCACAATGGGTAGTAGGTCTTTGGTTTACAAACCTGCCATGCTCTCAATGGTGGCCGTAGCAGCTGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCTGAAGTTCTGTATGTGTTCCAACCCTTCAGGTGGGAGTCATTGGACTTCGGTACAAGCTGAGGTTCATTAACATAATACAATTTTATAGGCAATGTACTAGGATGCGATCATAGACTGTATGACCCGGGGATTTCCTGTAGGACTGGTGCTTTGTATTGGCTATATTCTGCAATGTTATTTACATATTCTTTATCTATCAGTGTACTTATATTGTATGTGGATATTGCAGAATTTTCTCAGTTTCAC	3610	0.4305	MEARFGTEAFPFYGVGSSDLRAVGKRPVEWDLNEWKWDGDLFIATPLNPEPADIVGQQFFPLGSRIPTAGVSSNSSSSTSDEVNLGIDKGKKEGEKKRRVIVVEDDCLNEEAGSLSLKLGGNGSPVADREIASWEGTNGKKTRLTGGTSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHDVVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQTTDQDLLCHLLKSLAGQNGEQGDKNLSDLLREPGNLLKEGTSSGKSEMVSTLLSNGSQGLIRQHQTVSMTEMQHQVMHTHDARASDQQTTSSTKPSISNSPPAYSEARDSTARQIKINNFDLNDIYIDSDDDGMEDMERLPASVNLGTGSLDYPWAQQDSLQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLLLRAQILDWLSHSPTDMESYIRPGCVVLTTYLRQAEAVWEEICYDLTSSLNRLLEVSDDAFWRTGWVYIRLPHQIAFIFNGQVVIDTSLPFRSNNYCKILSVSPIAVPASRRTQFSVKGINLIRPASRLLCALEGKYLVCEDAHESTAKRNEDAYESMDGLDCSKDVHELQCVQFSCAIPVPNGRGFIEIEDQGLSSSFFPFVVAEEDVCSEICILENLLESSETDLDVGGAGKTKTKSQAMDFIHEMGWLLHRSQLKSRLVHLNSNTDLFPLKRFKWLMEFSMDHDWCAVVRKLLNLLQDGIVDNGDQPSLYLALSEMGLLHRAVRRNSRKLVELLLRYVPENISDKLGPDNTALVDGESQSFLFRPDVVGPAGLTPLHIAAGKDGSEEVLDALTDDPCMVGIEAWKSARDTTGSTPEDYARLRGHYTYIHLVQKKINKKQVAAAHVVVEIPSEQPDSSTKQKQNELTTSFEIGKASVRNVHGHCRLCDHKLSCRTTMGSRSLVYKPAMLSMVAVAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g00316	1024	MobiDBLite	consensus disorder prediction	338	376	-	-
	Bach8g00316	1024	MobiDBLite	consensus disorder prediction	218	239	-	-
	Bach8g00316	1024	SUPERFAMILY	SBT domain	152	233	IPR036893	GO:0003677\|GO:0005634
	Bach8g00316	1024	Gene3D	-	764	926	IPR036770	-
	Bach8g00316	1024	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	90	909	IPR044817	GO:0003677
	Bach8g00316	1024	Gene3D	-	145	215	IPR036893	GO:0003677\|GO:0005634
	Bach8g00316	1024	MobiDBLite	consensus disorder prediction	348	376	-	-
	Bach8g00316	1024	SUPERFAMILY	Ankyrin repeat	791	908	IPR036770	-
	Bach8g00316	1024	FunFam	Squamosa promoter-binding-like protein 14	145	215	-	-
	Bach8g00316	1024	ProSiteProfiles	Zinc finger SBP-type profile.	151	228	IPR004333	GO:0003677
	Bach8g00316	1024	MobiDBLite	consensus disorder prediction	420	455	-	-
	Bach8g00316	1024	Pfam	SBP domain	154	227	IPR004333	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g00316	Bach-Chr8	2103608	2111234	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g00316	24	1024	SBP-box Gene Family	AT3G60030	55.413	0.0	986

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Bach8g00316		SBP	1.2e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g00316	-		-	gmx:100814273	1587.01