Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00275 ATGGAGGCTGGTAATAAAGAAGACATTGAAAAATTCAGCAAACGGACTGTGAAGGTTACAAAGCAGCATAATGAAGACTGTCAAAGACTTTTAAGACTTATGGGAGTGCCTGTTATCGAGGCACCCTCAGAAGCAGAGGCACAGTGTGCTGAACTTTGCAAAGCTGGAAAGGTTTACGCTGTGGCTTCTGAAGACATGGATTCCTTAACGTTTGGAGCTCCGAGATTTCTTCGCCATTTAATGGATCCTAGCTCAAAAAAAATCCCTGTCATGGAATTTGAAGTTGCAAAGGTTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACTTATGCATCCTCTCTGGTTGTGACTACTGTGATAGCATTCGAGGGATTGGGGGACAAACTGCCTTGAAGCTCATACGCCAATATGGCTCTATAGAGAATATACTGGAGAACGTAAACAGAGAGAGGTACCAAATACCAGATGATTGGCCATATCAGCAGGCTCGTCAGCTTTTTAAAGAACCATTAGTTATAACTGAAGAAGAGCAACTTGATCTTAAGTGGACTGCTCCAGACGAAGAAGGGTTGCTTACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAGAAAATAAAAGCAGCAAAGAACAAGTCATCACAGGGACGATTGGAGTCATTTTTTAAGCCAGCAGCAAATCCATCTGCACCCATTAAACGGAAGGAAGTACCTGGAAATATTGCTAAAGGGACAAACAAGAAGACGAAGGCCAGTGGTGGTCATCCACCATTTAAATGCTGGAAGAGACCAGATGCAAAATGTACCAAGTGCAATCAGCTTGGACATGAAGCCGTGATTTGCAACAGCAAACCTCAAGAGCAAGAAGAAGGTGCTAAAGTTGCTGACCAAGAAGAAGAAGAAATTTTTGTAGCAATGTGTTCTTCAACCAACAGTTCTTCAGAATATTGGCTGATTGACAGTGGGTGTACAAACCACATGACCTATGACAAAACTCTTTTCAAAGAGTTGAAGCCTGCTGAAACAAGGGTCAGAATTGGGAATGGTGGTTACATCACTGCAAAAGGAAAAGGAACTATTGCAATTACAACAAGTTCAGGTACAAAACTAATCTCAAATGTTCTTTATGTACCTGATATTGATCAAAATTTGCTCAGTGTGGGTCAATTGATAGAAAAAGGATTTAAATTCATTATGAAGCTCAAGGTCTCTCTGCTCATTGTGACTTTTGCTGTGGCGTTTGCCACTGCTGCTGCAGATCCTGACCTTCTTCAAGACGTCTGTGTCGCCGATCTCACTTCTGAGGTGAAAGTCAATGGGTTTACCTGCAAAGACGTATCCAAAATAAACGCCTCTGACTTCTTCTCGGATATACTAGCCAAACAAGGAGCTACAAATAACACCTTTGGGTCACTGGTCACAGGAGCCAACGTAGAAAAAATCCCAGGACTCAACACTTTGGGTGTCTCTATGTCTCGAATTGACTATGCCCCTGGTGGCCTTAACCCACCCCACACTCACCCACGAGCCACTGAGATAGTTTTTGTGATTAAAGGTGAATTAGATGTAGGGTTCATAACCACTGGAAACGTGCTTATATCAAAGTCCATCAAGAAGGGTGAGGTATTTGTGTTTCCAAAAGGGTTAGTTCACTTCCAAAAGAACAATGGGAAGATGCCTGCTTCTGTAATTGCAGCCTTCAACAGTCAATTGCCTGGCACACAGTCCATTGCCACCACCTTGTTTGCTGCTACGCCAGCGGTTCCAGACAATGTATTGACAAAGGCATTCCAAGTGGGTACTAAGGAGGTTAAGAAAATTAAATCTAGGCTTGCACCAAAGAAGTAA 1875 0.4256 MEAGNKEDIEKFSKRTVKVTKQHNEDCQRLLRLMGVPVIEAPSEAEAQCAELCKAGKVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQYGSIENILENVNRERYQIPDDWPYQQARQLFKEPLVITEEEQLDLKWTAPDEEGLLTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSAPIKRKEVPGNIAKGTNKKTKASGGHPPFKCWKRPDAKCTKCNQLGHEAVICNSKPQEQEEGAKVADQEEEEIFVAMCSSTNSSSEYWLIDSGCTNHMTYDKTLFKELKPAETRVRIGNGGYITAKGKGTIAITTSSGTKLISNVLYVPDIDQNLLSVGQLIEKGFKFIMKLKVSLLIVTFAVAFATAAADPDLLQDVCVADLTSEVKVNGFTCKDVSKINASDFFSDILAKQGATNNTFGSLVTGANVEKIPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEIVFVIKGELDVGFITTGNVLISKSIKKGEVFVFPKGLVHFQKNNGKMPASVIAAFNSQLPGTQSIATTLFAATPAVPDNVLTKAFQVGTKEVKKIKSRLAPKK 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00275 624 CDD PIN_FEN1 1 217 - -
Bach8g00275 624 SMART HhH_4 106 139 IPR008918 GO:0003677|GO:0003824
Bach8g00275 624 PRINTS Germin signature 514 534 IPR001929 GO:0030145
Bach8g00275 624 PRINTS Germin signature 544 564 IPR001929 GO:0030145
Bach8g00275 624 PRINTS Germin signature 577 592 IPR001929 GO:0030145
Bach8g00275 624 SUPERFAMILY RmlC-like cupins 429 619 IPR011051 -
Bach8g00275 624 Gene3D - 1 107 - -
Bach8g00275 624 Gene3D Jelly Rolls 428 622 IPR014710 -
Bach8g00275 624 FunFam Flap endonuclease 1 104 171 - -
Bach8g00275 624 ProSitePatterns XPG protein signature 2. 35 49 IPR019974 GO:0016788
Bach8g00275 624 CDD H3TH_FEN1-Euk 107 175 - -
Bach8g00275 624 Hamap Flap endonuclease 1 [fen]. 1 232 IPR023426 GO:0016788
Bach8g00275 624 MobiDBLite consensus disorder prediction 238 265 - -
Bach8g00275 624 Pfam XPG I-region 35 119 IPR006086 GO:0004518
Bach8g00275 624 SUPERFAMILY PIN domain-like 2 119 IPR029060 -
Bach8g00275 624 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 104 237 IPR036279 -
Bach8g00275 624 SMART xpgineu 32 104 IPR006086 GO:0004518
Bach8g00275 624 FunFam germin-like protein subfamily 2 member 1 428 622 - -
Bach8g00275 624 Pfam Cupin 469 614 IPR006045 -
Bach8g00275 624 Gene3D - 108 171 - -
Bach8g00275 624 ProSitePatterns Germin family signature. 509 522 IPR019780 GO:0030145
Bach8g00275 624 CDD cupin_OxOx 429 620 IPR001929 GO:0030145
Bach8g00275 624 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 424 618 - -
Bach8g00275 624 SMART Cupin_1_3 465 614 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00275 Bach-Chr8 1817280 1827331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00275 1 244 Core DNA Replication Machinery Family AT5G26680 85.656 7.73e-156 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00275 K04799 - gmx:100792878 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00275 8 1817280 1827331 Bach1g03105 1 40653859 40655555 BWGD