Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach8g00198 GAGAATACAGGATCAGCATCTTGGTTCGCTTAGTTTCTTCCTAGAATGAGTCGCCGGTCCAGTTGCACTATCTATGTTGGCAATCTTCCTGGTGATATTCGGTTGAGAGAAGTGGAAGATCTGTTCTACAAGTATGGTCCCATTGTTGACATTGATTTGAAAATCCCTCCTAGACCGCCAGGTTATGCTTTTGTGGAGTTTGAGGATCCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATATAATTTTGATGGCTTTCGATTACGAGTCGAACTTGCACATGGTGGGCAGGGATATTCATCATCAGTAGACCGCCATAGTAACTATAGTGGTGGGGGAAGCTGTGGAGCTTCCGGACGTTCAGACTATCGTGTTCTGGTCACTGGATTACCTCCTTCAGCTTCATGGCAGGACCTGAAGGATCATATGCGTAAAGCTGGTGATGTATGTTTCTCTCAAGTCTTCCGTGAGCGTGGTGGCATGATGGGGATTGTGGATTATACCAACTATGAAGATATGAAATATGCTGTCAGGAAGCTAGATGACTCAGAATTTCGGAATGCATTTTCTCGGGCATTTATAAGGGTGCGTGAGTACGATCGACGGAGTTATTCTAGGAGTCCTAGTTATGATTCAAGGAGGAGCTATTCTAGGAGTCGTAGCCGCAGTGCATATATGTCGCGAAGTCAAAGTCGTAGCTATAGTGGCAGGAGCAGAAGTTTTTCTCCCAAAGCAAGACAGTCACGACCTTCAGGTTCTCCCTCAAGGTGTTGGAGTGTTGACACAAGCCTGGAGGATCATGATGACATGTGGTGCTCAAACGCCTGCAACTTTGTGGTTGAGGAATGGTCTGCTATTGTTGTATCCCGATCAAGATCCAGATCCCCGAATTTATCTCCTCTGCCTCGCAAAAGTCGTAGTCCTAGCCGAAGTCTAAGGAGCTCATCACAATCCCGTTCGCCTTCAGTCAGAGCTGAACGAAGCAGATCTGGTGATTCTAGAGATCGTTATTGA 1020 0.4618 MSRRSSCTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGQGYSSSVDRHSNYSGGGSCGASGRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMMGIVDYTNYEDMKYAVRKLDDSEFRNAFSRAFIRVREYDRRSYSRSPSYDSRRSYSRSRSRSAYMSRSQSRSYSGRSRSFSPKARQSRPSGSPSRCWSVDTSLEDHDDMWCSNACNFVVEEWSAIVVSRSRSRSPNLSPLPRKSRSPSRSLRSSSQSRSPSVRAERSRSGDSRDRY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach8g00198 324 CDD RRM2_SF2_plant_like 110 185 - -
Bach8g00198 324 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Bach8g00198 324 MobiDBLite consensus disorder prediction 206 245 - -
Bach8g00198 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Bach8g00198 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bach8g00198 324 SMART rrm1_1 111 180 IPR000504 GO:0003723
Bach8g00198 324 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bach8g00198 324 Gene3D - 2 110 IPR012677 -
Bach8g00198 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bach8g00198 324 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 109 - -
Bach8g00198 324 FunFam serine/arginine-rich splicing factor SR34A-like 110 187 - -
Bach8g00198 324 MobiDBLite consensus disorder prediction 280 311 - -
Bach8g00198 324 CDD RRM1_SF2_plant_like 8 79 - -
Bach8g00198 324 MobiDBLite consensus disorder prediction 192 245 - -
Bach8g00198 324 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 4 241 - -
Bach8g00198 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Bach8g00198 324 MobiDBLite consensus disorder prediction 280 324 - -
Bach8g00198 324 Gene3D - 111 187 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach8g00198 Bach-Chr8 1315486 1320228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach8g00198 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 5.89e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach8g00198 K12890 - gmx:100794282 344.354