LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g00078	ATGGCTCCGGATCCAAGAGTTGTCAATGCCTTTAGAGCCATGAAGACCTTGGGAATTTCTCATGAAGAGGTGAAGCCCGTATTGAAAGAGCTGTTAAGAGTGTATGACAAAAACTGGAAAACTATTGAAGAAGACAATTATCGGACGCTTATAGATGCATACTTTGAGTTTAAGGAAGATGAGAGAGCAGAACGGAAGAGAAAAGCTCCCATCAGCCATGATGTTGGACAAAGAGCTACTCCGAAACTGCACTTGGCAGATGAGGGTGATCAGATTTCGTCAGCCAGGGATAACACAAGCTCAATGTTATCTATAGAAGATAAAGAAATACCTCTAGAAGTTTCTGGACATGAAAATATTGAGTCATCGAAGCCTTTCATGAGAAATAAGAGGCCCAAAACGAGTCCCCAGGAATCCCACGCAATGTTGAGTGACGTGGAAATCACCTCAAATTCACACTATATGGCTGTTGGAGATAGAAAATCATCATCCGCACGGCATTGTGAAGAGCAAATTTGTGAACCTAGGCATGCTCATATCCAAAGAAAGAATATGCCGAGCGATCATTGTAAGAAAGAGATAATTAAGTCAAAAACTGAGTATTATGGCATGGATTCAAATGGAAAGTGCTCAAACAATGGATCAGTTTTGCCAGAGCAAGCTGTCGCTCAATATCAAAAGAAATGCTTTCATTTTCTTAATGACATAACAAAAGGTTCAGAAAGGGTGAAAATATCATTGATAGATGAAATTGGCAACGAGGACTTGCCGAAGGTTAATTACATACCACATAATATAATATACCAAAGTGCTAATGTAAATATTTCATTGGCTAGGATTGTGGATGAGGATTGCTGTTCTGATTGTTCAGGTGACTGTCTTTCATTATCAATACCCTGTGCATGTTCTCAAGAAACTGGTGGAGAGTTTGCTTACACCCCACAAGGTTTATTGAAAGAAGAATTTCTAATGACATGCATGTCTATGAAAGGGGATCCTTTGGCTCATCGTTATGTGTACTGTCAAGATTGCCCGCTGGAGAGGTCTCAGAATGAGTATAAGCCAGAAGCATGCAAGGGACATCCAGTTAGGAAGTTCATAAAGGAATGTTGGAGGAAATGTGGATGTGATATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAGGATGCAAATTACAGGTGTTCTTGACTCGTCAAGGAAAGGGTTGGGGTCTTAGAACACTAGAAGATTTGCCCATGGGATCCTTTGTATGTGAATATGTTGGGGAAATATTAACCAACATGGAGTTATATGAAAGGATTGTGAATAGTGGCAGCGATGATAAGCATACATACCCTGTAACCCTTGATGCAGACTGGGGCTCGGAGAGAGTATTAAAGGATGAAGAGGCACTATGTCTAGATGCAACATATAATGGAAATGTTGCAAGATTTATCAATCATAGATGCTCCGATGCAAATCTGATAGACGTTCCAGTTGAAGTGGAGACTCCTGATCGCCACTATTATCACCTTGCCTTCTTTACCAACAGGGAAGTGAGTGCTTATGAGGAGCTGACATGGGATTACGGTATTGACTTTGATGATCATGACCATCCTATTGAAGCATTTCAATGTCGTTGTGGAAGTACATTATGCCGTGATAAGAAACGAAAAGGAAAAAGGATAATGGGAAAACGGGTTAGAGAATTTTCTAAACCTATTGAGGCCACTGAAGCGGATCCCCACTCCACAACCGTTGGCGCAACTGGAGCGAAACCATATTCTTGA	1773	0.4106	MAPDPRVVNAFRAMKTLGISHEEVKPVLKELLRVYDKNWKTIEEDNYRTLIDAYFEFKEDERAERKRKAPISHDVGQRATPKLHLADEGDQISSARDNTSSMLSIEDKEIPLEVSGHENIESSKPFMRNKRPKTSPQESHAMLSDVEITSNSHYMAVGDRKSSSARHCEEQICEPRHAHIQRKNMPSDHCKKEIIKSKTEYYGMDSNGKCSNNGSVLPEQAVAQYQKKCFHFLNDITKGSERVKISLIDEIGNEDLPKVNYIPHNIIYQSANVNISLARIVDEDCCSDCSGDCLSLSIPCACSQETGGEFAYTPQGLLKEEFLMTCMSMKGDPLAHRYVYCQDCPLERSQNEYKPEACKGHPVRKFIKECWRKCGCDMQCGNRVVQRGLGCKLQVFLTRQGKGWGLRTLEDLPMGSFVCEYVGEILTNMELYERIVNSGSDDKHTYPVTLDADWGSERVLKDEEALCLDATYNGNVARFINHRCSDANLIDVPVEVETPDRHYYHLAFFTNREVSAYEELTWDYGIDFDDHDHPIEAFQCRCGSTLCRDKKRKGKRIMGKRVREFSKPIEATEADPHSTTVGATGAKPYS	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g00078	590	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	586	IPR025776	-
	Bach8g00078	590	CDD	SET_SETDB-like	261	525	-	-
	Bach8g00078	590	MobiDBLite	consensus disorder prediction	567	590	-	-
	Bach8g00078	590	Pfam	Ubiquitin-binding WIYLD domain	5	59	IPR018848	-
	Bach8g00078	590	Pfam	SET domain	403	525	IPR001214	GO:0005515
	Bach8g00078	590	Pfam	Pre-SET motif	236	383	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Bach8g00078	590	FunFam	SET-domain containing protein lysine methyltransferase family protein	236	550	-	-
	Bach8g00078	590	Gene3D	SET domain	234	550	IPR046341	-
	Bach8g00078	590	Gene3D	-	1	60	IPR043017	-
	Bach8g00078	590	ProSiteProfiles	Pre-SET domain profile.	285	388	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Bach8g00078	590	SMART	preset_2	233	375	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Bach8g00078	590	MobiDBLite	consensus disorder prediction	62	104	-	-
	Bach8g00078	590	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	555	-	-
	Bach8g00078	590	SMART	set_7	391	531	IPR001214	GO:0005515
	Bach8g00078	590	ProSiteProfiles	SET domain profile.	391	525	IPR001214	GO:0005515
	Bach8g00078	590	SUPERFAMILY	SET domain	243	548	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g00078	Bach-Chr8	568196	571962	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g00078	298	548	C2H2 Transcription Factor Family	AT2G23740	33.088	3.99e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Bach8g00078		Pre-SET	5.3e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g00078	-		-	psat:127094085	665.611