Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach7g01277 ATGGCGGTCAAACCCCTATGTCGGGGTTTGGTGGTGAAAGCATGGTCTCCCGCTGAGATTGATTCTTTCCATTGTGTTGCAGAGAGAACCGAGAAAACTTTCAAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGTTCTGACACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTCGCAGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGAGCTCTGACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTATAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTCGAGAGCTCTGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGACTATAACATTCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGTATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACAATTACTCTTGAGGTTGAGAGCTCTGATACAATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGTACCCTTGCAGACTACAACATTCAGAAGGAGTCCACCCTCCACCTTGTGCTTCGTCTTAGGGGAGGCATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATTACTCTTGAGGTTGAGAGCTCAGACACTATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTCCACCTTGTGCTTCGTCTGCGTGGTGGATTCTGA 1251 0.5164 MAVKPLCRGLVVKAWSPAEIDSFHCVAERTEKTFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach7g01277 416 CDD Ubl_ubiquitin 188 263 - -
Bach7g01277 416 Gene3D - 188 263 - -
Bach7g01277 416 Gene3D - 28 111 - -
Bach7g01277 416 Gene3D - 112 187 - -
Bach7g01277 416 Gene3D - 264 340 - -
Bach7g01277 416 Gene3D - 341 416 - -
Bach7g01277 416 FunFam Polyubiquitin 3 112 187 - -
Bach7g01277 416 FunFam Polyubiquitin 3 340 415 - -
Bach7g01277 416 Pfam Ubiquitin family 190 261 IPR000626 GO:0005515
Bach7g01277 416 Pfam Ubiquitin family 38 109 IPR000626 GO:0005515
Bach7g01277 416 Pfam Ubiquitin family 266 337 IPR000626 GO:0005515
Bach7g01277 416 Pfam Ubiquitin family 114 185 IPR000626 GO:0005515
Bach7g01277 416 Pfam Ubiquitin family 342 413 IPR000626 GO:0005515
Bach7g01277 416 PRINTS Ubiquitin signature 88 109 IPR019956 -
Bach7g01277 416 PRINTS Ubiquitin signature 46 66 IPR019956 -
Bach7g01277 416 PRINTS Ubiquitin signature 67 87 IPR019956 -
Bach7g01277 416 CDD Ubl_ubiquitin 36 111 - -
Bach7g01277 416 SUPERFAMILY Ubiquitin-like 263 339 IPR029071 -
Bach7g01277 416 SUPERFAMILY Ubiquitin-like 111 187 IPR029071 -
Bach7g01277 416 ProSitePatterns Ubiquitin domain signature. 138 163 IPR019954 -
Bach7g01277 416 SMART ubq_7 264 335 IPR000626 GO:0005515
Bach7g01277 416 SMART ubq_7 340 411 IPR000626 GO:0005515
Bach7g01277 416 SMART ubq_7 36 107 IPR000626 GO:0005515
Bach7g01277 416 SMART ubq_7 112 183 IPR000626 GO:0005515
Bach7g01277 416 SMART ubq_7 188 259 IPR000626 GO:0005515
Bach7g01277 416 FunFam Polyubiquitin 3 264 339 - -
Bach7g01277 416 ProSitePatterns Ubiquitin domain signature. 214 239 IPR019954 -
Bach7g01277 416 CDD Ubl_ubiquitin 340 415 - -
Bach7g01277 416 FunFam Polyubiquitin 3 188 263 - -
Bach7g01277 416 SUPERFAMILY Ubiquitin-like 35 111 IPR029071 -
Bach7g01277 416 SUPERFAMILY Ubiquitin-like 187 263 IPR029071 -
Bach7g01277 416 ProSitePatterns Ubiquitin domain signature. 366 391 IPR019954 -
Bach7g01277 416 ProSitePatterns Ubiquitin domain signature. 62 87 IPR019954 -
Bach7g01277 416 CDD Ubl_ubiquitin 264 339 - -
Bach7g01277 416 ProSiteProfiles Ubiquitin domain profile. 112 187 IPR000626 GO:0005515
Bach7g01277 416 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Bach7g01277 416 ProSiteProfiles Ubiquitin domain profile. 188 263 IPR000626 GO:0005515
Bach7g01277 416 CDD Ubl_ubiquitin 112 187 - -
Bach7g01277 416 ProSitePatterns Ubiquitin domain signature. 290 315 IPR019954 -
Bach7g01277 416 ProSiteProfiles Ubiquitin domain profile. 340 415 IPR000626 GO:0005515
Bach7g01277 416 FunFam Polyubiquitin 3 36 111 - -
Bach7g01277 416 ProSiteProfiles Ubiquitin domain profile. 264 339 IPR000626 GO:0005515
Bach7g01277 416 PANTHER UBIQUITIN 188 265 - -
Bach7g01277 416 SUPERFAMILY Ubiquitin-like 339 415 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach7g01277 Bach-Chr7 23008230 23010816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach7g01277 340 416 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.56e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach7g01277 K08770 - pavi:110774095 739.184