Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach7g00160 ATGTACACCCGTGGTGCTACAAGCGTGAGATGCTCCTGCTGTCACACCATGAACCTTGCACCAGCATCTAATGTCGCCCATATCCACTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCATCAGTGAAATGTGCAGTTTGTCACTATATTACTAATGTTGGTATGACTAATGGAAGACCTCCAATCCCCGTCCATAGACCTAATGGTACAACCAACTCTGGAACATTACCTTCTACTTCAACATCAATGCCTCACTCACAGAGCCAAACCGTAGTGATTGAAAATCCTATGTCCTTTGATGCGAGTGGGAAATTGGTGAGCAACGTGGTCGTTGGAATCACAACAGATAAGAAATAATAATGCCCCGTCTGATTATTATTGTGTTAGACTTACAAGGTGCATTATACGAGGCAGTATCCCCATTGGCTGAGACAGAGACCGATATTGTGTATATTATGTTGGATGCTGCAATGGTTAGATTTAAGGTCAAGAATCCTTTTTGCCGTACGGGG 524 0.4427 MYTRGATSVRCSCCHTMNLAPASNVAHIHCGNCRTTLMYPYGAPSVKCAVCHYITNVGMTNGRPPIPVHRPNGTTNSGTLPSTSTSMPHSQSQTVVIENPMSFDASGKLVSNVVVGITTDKK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach7g00160 122 NCBIfam zinc finger domain, LSD1 subclass 27 56 IPR005735 -
Bach7g00160 122 NCBIfam zinc finger domain, LSD1 subclass 1 19 IPR005735 -
Bach7g00160 122 MobiDBLite consensus disorder prediction 62 92 - -
Bach7g00160 122 Pfam LSD1 zinc finger 1 17 IPR005735 -
Bach7g00160 122 Pfam LSD1 zinc finger 30 54 IPR005735 -
Bach7g00160 122 PANTHER PROTEIN LSD1 1 121 IPR040319 -
Bach7g00160 122 MobiDBLite consensus disorder prediction 70 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach7g00160 Bach-Chr7 3589242 3593118 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Bach7g00160 zf-LSD1 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach7g00160 - - gmx:100776394 224.557