Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach7g00093 ATGAGTGAGAGGGTCAGTGGCAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTTGGCTTCATAACCCCTGACGATGGTGGTGAGGATCTCTTTGTTCATCAGTCTTCCATCCGATCTGATGGATTTAGGAGCCTCGGCGATGGAGAATCTGTCGAATTTCTGATTGAGTCTGATTCTGATGGCCGGACCAAGGCTGTTGATGTAACTGGCCCTGAGGAATCATCGGTTCAGGGAAGCCGCCGCGGTGGTGGTGGAGGAGGAGGAGGAGGAGGTAACAGGGGTTACGGTGGCGGACGCGGGGGCGGCTATGGTTCCGGTGGCGGAGGATATGGTGGTGGTGGACGAGGCAGTGGCGGAAGAGGTGGCGGCTATGGAGCTGGAGGTTATGGGGCTGGAGGCGGTGGCTATGGAGCTGGAGGCGGCGGCGGTGGCTATGGGGCTGGAGGCGGCGGTGGTGGCTGCTACAAGTGCGGTGAGGCGGGTCACTTGGCAAGGGATTGCTACCAAGGAGGCGGTGGTGGTGGAGGTAGGTATGGCAGCGGCGGCGGCGGCGGCGGAGGTGGGAGCTGCTATAAATGCGGGGAGTCTGGGCATTTCGCGAGGGACTGCCCCAACAACGGTCGTTGA 627 0.6061 MSERVSGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSDGFRSLGDGESVEFLIESDSDGRTKAVDVTGPEESSVQGSRRGGGGGGGGGGNRGYGGGRGGGYGSGGGGYGGGGRGSGGRGGGYGAGGYGAGGGGYGAGGGGGGYGAGGGGGGCYKCGEAGHLARDCYQGGGGGGGRYGSGGGGGGGGSCYKCGESGHFARDCPNNGR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach7g00093 208 ProSiteProfiles Zinc finger CCHC-type profile. 154 167 IPR001878 GO:0003676|GO:0008270
Bach7g00093 208 SMART c2hcfinal6 153 169 IPR001878 GO:0003676|GO:0008270
Bach7g00093 208 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
Bach7g00093 208 Gene3D - 1 82 IPR012340 -
Bach7g00093 208 FunFam Cold shock protein 1 1 69 - -
Bach7g00093 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 206 - -
Bach7g00093 208 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Bach7g00093 208 SMART csp_8 6 71 IPR011129 GO:0003676
Bach7g00093 208 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Bach7g00093 208 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Bach7g00093 208 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Bach7g00093 208 Pfam Zinc knuckle 153 167 IPR001878 GO:0003676|GO:0008270
Bach7g00093 208 Pfam Zinc knuckle 189 205 IPR001878 GO:0003676|GO:0008270
Bach7g00093 208 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Bach7g00093 208 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Bach7g00093 208 SUPERFAMILY Nucleic acid-binding proteins 2 70 IPR012340 -
Bach7g00093 208 SUPERFAMILY Retrovirus zinc finger-like domains 145 206 IPR036875 GO:0003676|GO:0008270
Bach7g00093 208 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Bach7g00093 208 Gene3D - 150 208 - -
Bach7g00093 208 MobiDBLite consensus disorder prediction 55 93 - -
Bach7g00093 208 ProSiteProfiles Zinc finger CCHC-type profile. 190 205 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach7g00093 Bach-Chr7 1638096 1638722 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bach7g00093 CSD 4.4e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach7g00093 - - qsa:O6P43_011479 143.28