Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g01610 CAACGATGGTGTATGTCAAGGCTCAAAAATCAAAAGCCTATTTCAAGAGGTTCCAAGTCAAGTTTAAGAGAAGAAGAGAGGGTAAGACTGACTATAGAGCCCGGATTAGGCTGATCAACCAGGATAAGAACAAGTACAACACACCAAAATACAGATTTGTGGTTCGCTTTACAAATAAGGATATTATCGCACAGATAACATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCTGCTTATGCAAATGAGCTGCCTAACTATGGTTTGAAAGTTGGACTCACTAACTATGCTGCTGCGTACTGCACTGGACTCCTTTTGGCCCGTAGAGTCCTAAAGATGCTTGAAATGGATGCAGAGTACGAGGGCAATGTAGAGGCTACTGGAGAGGACTTTTCCGTTGAGCCTGCTGATACAAGGAGGCCATTCCGTGCCCTTCTTGATGTTGGTCTTATTAAGACTACAACCGGCAATCGTGTATTTGGTGCCCTTAAGTGTACCTATGGTGGTGGTCTCAGTAACCATTATGTATTACAGGGGGCTCTGGATGGTGGTCTTGATATCCCTCACAGTGATAAAAGGTTCGCTGGTTTTAACAAGGACAAGAAGGAGCTTGATGCTGAGGTTCACCGCAAATATATCTACGGTCTCCATGTTGCTGCCTATATGAAGACTTTGATGGAAGATGAGCCAGAAAAATACCAAACACATTTCAGCCAATACATCAAGGAAGGAATAGAGCCTGATGGCATTGAGGAGATGTACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCTACTATGAAGAAGACACAGAAGGAGCTACCTAAGGAGCACAAGAGGTACAACCTCAAGAAGCTTACCTATGAGGAGAGGAAGGCCAAGTTGATTGCACGTGTCCAGGTTCTCAACTCTGCCATTGAAGAGGATGAAGATGAGGAAGACGATGAGTGAATGATCTTTGTAGATGCATCCTAAGTGCTACCCTTCTAGATTTTTTTTTTTTTTTATAAGAGAACTTTCTGTTTCTGAAATCTGTTTCCCAGAAATTTTGTTTTGTACTGTT 1065 0.4282 MVYVKAQKSKAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYANELPNYGLKVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDFSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKCTYGGGLSNHYVLQGALDGGLDIPHSDKRFAGFNKDKKELDAEVHRKYIYGLHVAAYMKTLMEDEPEKYQTHFSQYIKEGIEPDGIEEMYKKVHAAIRADPTMKKTQKELPKEHKRYNLKKLTYEERKAKLIARVQVLNSAIEEDEDEEDDE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g01610 315 Pfam Ribosomal L18 C-terminal region 249 299 IPR025607 -
Bach6g01610 315 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 171 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 SUPERFAMILY Translational machinery components 11 266 - -
Bach6g01610 315 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 Coils Coil 291 311 - -
Bach6g01610 315 Gene3D - 1 305 - -
Bach6g01610 315 FunFam 60S ribosomal protein L5 1 305 - -
Bach6g01610 315 CDD Ribosomal_L18_L5e 41 184 - -
Bach6g01610 315 Hamap 50S ribosomal protein L18 [rplR]. 14 260 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bach6g01610 315 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 171 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g01610 Bach-Chr6 23632551 23634693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g01610 1 304 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 79.934 2.04e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g01610 K02932 - rvl:131316889 510.375