Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g01399 ATGCTGCTTGGGCAAGCTCCTCCAGTAACCTTCATCCCAAAACCCAGTCGCTTGGAGTCGCAATATCAAAGCCATGGCTCTCTTTTCTTTTTCCATAATACTTGCTTCTGCGACAAAGCATGTACGAATAAATTGGTCAGAAGTGTTGGAAACTCGGTGCTGGTTAGAGCTGGGTATTCTCCTACACCCAAAGATGTTCTCTCTTGGAACCCCTCCACCACCAACAATGGGCTAAGGCAGAATTTGGTGAAATCTTCCCCCAAAACAAGTAAAACTGTCATTGAAGGCATTGAATATGAGCCAGTTATTACAGACAATGATTCGTTAGTAAACTCCAAGAGGATAATATCAGGGGGTTTCAGAAAATTGAAATCACAAAAGGTGAAGAATCTCATCCAGAGAACTTCTCGGTTGAAACAGGAAAGAAGTGAAGATGATGATGACCAAGCTGTAGGGACTTCTGTAGACAGGGAGAGTGTTGAAGATAATTCTAAACTTGAAACATTTGTGAAAGAGAAAAAAGAGGATGCACCCAACCATCGAGGTAGAGTTTCTAAAGCTCGCCTATCACATGAAAGCAGAGACAGGATGCAATTAATAGGAACGGAAGAAGATGATGTGAATTTTGGTTCCGCTTCAAACGTAGAGTATCAAATTACACCCAAGAAATTTCAAAACTCTAATAATGATATAGCCAGTTCCGGTGTGTCAGATGGAAGGCATTCAGCCTCTCATATAAGAGGTTGGGATGATGGAGGATCTTCACGTACTTTTAAGACTGAATCACAGAAACTTCCAAAGGAACAGATTGACAATGACTTTTTCAGTCGAAAGTCCTTTAAAGATCTAGGTTACACAGATTATATGTTTGAATCTCTGAAGAAGCAGCATTTCCTGCGGCCTTCACATATACAGGCCATGGCATTTGCACCCGTTATTGGTGGAAAGACCTGTGTCATTGCTGATCAGAGTGGTTCAGGAAAGACATTAGCATATCTTGCTCCAATAGTACAGCGTCTTAGACAAGAAGAGCTACATGGACAAGGAAAATACTCTTCACAAGCTCCTAGAGTGGTTGTGTTGGCACCGACAGCTGAGTTAGCTTCTCAGGTTTTAGATAACTGCCGATCAATGTCAAAATCTGGGGTACCATTCAAATCTATGGTGGTAACAGGTGGCTTTCGACAGAGAACTCAACTGGAAAATTTGGAGCAGGGTGTTGATGTTTTAATAGCAACACCTGGTCGTTTTATGTTGCTGATTAAGGAGGGCTTCCTTCAGTTGACAAATCTAAGATGTGCTGTGTTAGATGAGGTAGATATACTTTTCGGTGATGAGGACTTCAAAGCAGTACTTGAGTGCTTGATAAATACTTCACCTGTTACCACACAATATTTGTTTGTGACTGCAACTTTACCAAGAGACATTTACAACAAGCTAGTCGAAATTTTTGCTGACTGTGAAGTGATCATGGGACCTGGTATGCACCGGATAAGTTCTCGTCTTGAAGAGGTTTTAGTAGATTGCAGTGGCGAAGATGGTCAAGAAAAAAATCCCGATACAGCATTTTTGAACAAGAAAACTGCTCTTCTGCAGATTGTGGAGGGAAGTCCTGTTCCAAAAACCATTATTTTCTGTAATAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTGAAGCGTTCAGATAGAAAAGGAACTCGTAGGCAAGTTCTACCTTTCCATGCTGCCATGACCCAAGATTCAAGGCTTGCTAGCATGGAAGAGTTTATACGTTCTCCCTCAAAAGAAGTCTCTCAGTTTTTAGTGTGCACTGACAGGGCATCGCGGGGAATTGATTTTACCAAAGTGGATCATGTCATACTGTTTGATTTCCCACGTGATCCAAGTGAATATGTACGTCGTGTTGGAAGAACTGCCAGAGGTGCTGGGGGAAATGGCAAGGCATTTATTTTTGTAGTTGGCAAGCAAGTTTCCCTAGCAAGCAGAATAATGGAAAGGAACAGAAAAGGCCATCCACTGCATGATGTACCATTTGCCCATTAACTGGGAAAGAAAACTGGTCTGAGGAACAAAACTCTTGCTTACTGAGGTTGTTGCTTCAAACTGGCTGGATGCTGGCATGGGGCTCATCAGGGCCAACCTTGATTTTGCATGAGATCTATTACATTAAACCACCCTTAGTCCATTTTATCTTGCCACTTCTGTATAGAGCTCTGATATCAAAATGTAATTCTCTTGGCTCTCTTCAATTACAATTGCATAAAAAGAATTGTAGGCCTGTTTTTCAGATCAAACTTCAGTTATTTGGGACAAATATACCTTACATACTGAT 2335 0.4124 MLLGQAPPVTFIPKPSRLESQYQSHGSLFFFHNTCFCDKACTNKLVRSVGNSVLVRAGYSPTPKDVLSWNPSTTNNGLRQNLVKSSPKTSKTVIEGIEYEPVITDNDSLVNSKRIISGGFRKLKSQKVKNLIQRTSRLKQERSEDDDDQAVGTSVDRESVEDNSKLETFVKEKKEDAPNHRGRVSKARLSHESRDRMQLIGTEEDDVNFGSASNVEYQITPKKFQNSNNDIASSGVSDGRHSASHIRGWDDGGSSRTFKTESQKLPKEQIDNDFFSRKSFKDLGYTDYMFESLKKQHFLRPSHIQAMAFAPVIGGKTCVIADQSGSGKTLAYLAPIVQRLRQEELHGQGKYSSQAPRVVVLAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMLLIKEGFLQLTNLRCAVLDEVDILFGDEDFKAVLECLINTSPVTTQYLFVTATLPRDIYNKLVEIFADCEVIMGPGMHRISSRLEEVLVDCSGEDGQEKNPDTAFLNKKTALLQIVEGSPVPKTIIFCNKIETCRKVENALKRSDRKGTRRQVLPFHAAMTQDSRLASMEEFIRSPSKEVSQFLVCTDRASRGIDFTKVDHVILFDFPRDPSEYVRRVGRTARGAGGNGKAFIFVVGKQVSLASRIMERNRKGHPLHDVPFAH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g01399 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 681 IPR001650 -
Bach6g01399 681 Pfam DEAD/DEAH box helicase 303 476 IPR011545 GO:0003676|GO:0005524
Bach6g01399 681 Gene3D - 250 490 IPR027417 -
Bach6g01399 681 MobiDBLite consensus disorder prediction 226 240 - -
Bach6g01399 681 Pfam Helicase conserved C-terminal domain 527 642 IPR001650 -
Bach6g01399 681 CDD DEADc 291 478 - -
Bach6g01399 681 Gene3D - 499 675 IPR027417 -
Bach6g01399 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 278 306 IPR014014 GO:0003724
Bach6g01399 681 CDD SF2_C_DEAD 502 653 - -
Bach6g01399 681 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 126 678 - -
Bach6g01399 681 SMART helicmild6 553 643 IPR001650 -
Bach6g01399 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 653 IPR027417 -
Bach6g01399 681 MobiDBLite consensus disorder prediction 135 193 - -
Bach6g01399 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 490 IPR014001 -
Bach6g01399 681 SMART ultradead3 297 505 IPR014001 -
Bach6g01399 681 MobiDBLite consensus disorder prediction 226 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g01399 Bach-Chr6 15551242 15556984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g01399 272 653 Eukaryotic Initiation Factors Gene Family AT3G13920 29.040 2.19e-28 116