LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach6g01304	ATGACAAAGCAAGTAGCCAATGCCATTCTTCTAGCTTTGATTGTTTTCTTCAACAAAATTTCTGACACTGAAATGAGCAAAGATATACCAACCAGACCCGATGTTGTGAGTATCGGGGCTCTTTTCTCTTTCAATTCTACAATTGGCAAGGCTGCAAAAGTAGCAATAGCAGCTGCAGTTGATGATGTAAATTCTAGTCTAAAGGTTCTTAATGGAACAAAGCTGAAAATTTCAATGCAGGATGCTAATCATAATGGCTTTCTAGGCATAATCAAGGCTCTAAGGTTAATGGAGAATGATACAAAGGCCATAATTGGCCCCCAGTTTTCTGTCTCAGCTCACACAATTTCACAGGTTGCAAATGAGCTCCAGGTCCCTCTTTTATCATTTTCAGCTACAGATCCCACCCTTTCATCCCTAGAGTTCCCATACTTTGTCAGAACAACACAGAGTGATCTCTTTCAGATGTCAGCAATTGCAGATATTGTAGATTACTATGAGTGGAGAGATGTCATAACAATCTATGTTGATGATGATTATGGGAGAAATGGGATTGCTGCTTTAGGTGATAAGCTAGCTGACAAAAGATGCAAGATATTGTATAAAGCACCTCTCAGTCCTATCATGAACCGGTTTGACATAATTCATGTTCTGAGTAAGCTAGCATCTATGGAGTCCAGGGTTTTTATACTTCATACATATGCAGATTTGGGTCTAGAGGTTTTTGATGTTGCAAAAGACTTTGGGATGATGAGTGCTGGTTATGTTTGGATCACCACTGATTGGCTTTCCACCGTATTAGATACTAATTCTGATCTTGCTACAAAAGCCATTGATGACATTCAAGGTGTTCTTACGCTGCGTTCATACACGTCAGATTCTGAAATTAAAAGGAAACTTGTTTCCAGGTGGGAAAAATTAATTGGTGGAAAAACAACTGGTGGTTCAGTAGGATTGAATACATATGGTTTATATGCCTATGACACTGTATGGCTTTTGGCTCAAGCAATTGATGAGTTTCTAACTCAGGGAACTCATATTTCATTTTCAAGTGATTCAAAATTCAGCTTTTCAACCTTGTTCTCTTCTCAAAGAGAAAAGACAGTGAGCAATCTTAGTCGCTTTCTGCTTATAATATGGCTATTTGTGGTGCTAATACTGAACTCAACCTACACAGCAAGTTTGTCATCAATCCTTACAGTGGAGCAGCTATCTTCTACAATCAAAGGAATTGAGAGTTTACTCTCAAGCAACGACCCTATTGGTTTCCATACAGGTTCATTTTCTGAGAATTACTTAACTAATGAACTAAACATAAAGCATTCAAGGCTTGTTCCTCTGAACTCACCAGAGGAGTTTGAAAAAGCTTTAATCAATGGTCCTAAGAAGGGTGGTGTTGCTGCATTGGTTGATGAACGTGTATATATGGAGATTTTCCTCTCTACCAGATGTGAATACAGCATAGTGGGCCAAGATTTCATGAAAATGGGCTGGGCATTCGCCTTCCCAAGGGATTCACCACTTGCATTAGACATGTCAACTGCCATATTAAAGCTATCAGAGAATGGAGAACTCCAGAGGATTCGTGACAAATGGCTGAGACGAAGTGCTTGCATGACTCAAGGTGGGAAGCAAGAATTAGAGCGTCTTCCTCTTAAAAGCTTTCTTGGCCTATTTTTCATATGTGGATCAGCTTGCTTTCTTGCCCTCCTTGTGTACTTGATTCAGATGGTGTATAAGTTTATCAAACATAACTTGAACGAGTCTCAAACTTCTTCTACTTTGAGATCAAGGTCTGAAGTTCTTCGCTCATTTGCTTCATTTCTTGATGAAAAAGAAGAAATCATTGAAAGCAAATCAATGAGAAGACAGATCGAGAGGCCCTCTGTTGAACTTCGAGATTTTTCTAGTTGTTAG	1917	0.3912	MTKQVANAILLALIVFFNKISDTEMSKDIPTRPDVVSIGALFSFNSTIGKAAKVAIAAAVDDVNSSLKVLNGTKLKISMQDANHNGFLGIIKALRLMENDTKAIIGPQFSVSAHTISQVANELQVPLLSFSATDPTLSSLEFPYFVRTTQSDLFQMSAIADIVDYYEWRDVITIYVDDDYGRNGIAALGDKLADKRCKILYKAPLSPIMNRFDIIHVLSKLASMESRVFILHTYADLGLEVFDVAKDFGMMSAGYVWITTDWLSTVLDTNSDLATKAIDDIQGVLTLRSYTSDSEIKRKLVSRWEKLIGGKTTGGSVGLNTYGLYAYDTVWLLAQAIDEFLTQGTHISFSSDSKFSFSTLFSSQREKTVSNLSRFLLIIWLFVVLILNSTYTASLSSILTVEQLSSTIKGIESLLSSNDPIGFHTGSFSENYLTNELNIKHSRLVPLNSPEEFEKALINGPKKGGVAALVDERVYMEIFLSTRCEYSIVGQDFMKMGWAFAFPRDSPLALDMSTAILKLSENGELQRIRDKWLRRSACMTQGGKQELERLPLKSFLGLFFICGSACFLALLVYLIQMVYKFIKHNLNESQTSSTLRSRSEVLRSFASFLDEKEEIIESKSMRRQIERPSVELRDFSSC	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach6g01304	638	Gene3D	-	151	318	-	-
	Bach6g01304	638	FunFam	Glutamate receptor	151	308	-	-
	Bach6g01304	638	Pfam	Ligand-gated ion channel	345	565	IPR001320	GO:0015276\|GO:0016020
	Bach6g01304	638	Gene3D	-	391	532	-	-
	Bach6g01304	638	Pfam	Bacterial extracellular solute-binding proteins, family 3	391	533	IPR001638	-
	Bach6g01304	638	Gene3D	-	394	502	-	-
	Bach6g01304	638	FunFam	Glutamate receptor	430	537	-	-
	Bach6g01304	638	SUPERFAMILY	Periplasmic binding protein-like II	390	536	-	-
	Bach6g01304	638	SMART	GluR_14	311	535	IPR001320	GO:0015276\|GO:0016020
	Bach6g01304	638	SUPERFAMILY	Periplasmic binding protein-like I	32	346	IPR028082	-
	Bach6g01304	638	Gene3D	-	54	354	-	-
	Bach6g01304	638	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	49	65	-	-
	Bach6g01304	638	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	326	338	-	-
	Bach6g01304	638	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	491	512	-	-
	Bach6g01304	638	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	109	137	-	-
	Bach6g01304	638	Pfam	Receptor family ligand binding region	54	344	IPR001828	-
	Bach6g01304	638	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	354	592	IPR015683	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach6g01304	Bach-Chr6	12784959	12789384	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach6g01304	355	626	Ion Channels	AT3G51480	62.774	1.41e-108	346

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach6g01304	K05387		-	cave:132170723	436.802