LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach6g01272	TTCACACTGATATATTCCCTGTTTCTCTTCTATTCTCTGAACCAATTCATCTCTGGTTAAAGTCAAATCAGCGGGCTCTGATCCACCGATCACATGGCAAAACCAGGGGTGGGGTATTCTGATCCGCCGTCGGCGGCGGCGAAGATGATAGAGTTGAAGAAGGAGTTGCAGAGGTTGGTGAAGTCTATTGTTGATGATGAGGATTGCAGCACTGAAACCATTGATCAAGCTAAGGAAACTTTGTCTCTGCTAAAGGACTTGAAGCTGAGAAAGAGATCATCTTCAATGTCTTTGGAGCTTCACAAAACTGTGCCTTGCCCGGAGGAATTCAAGTGCCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCCTCTGGAAAGACATATGACAGATCATTCATTCAACAATGGCTGAAAGCAGGAAACAGGACTTGCCCACAAACCCGACAAGTCCTCTCACACACTTTGCTCACTCCTAACCACCTAGTTTGCAAGATTATACAACAATGGTGTAAAAACCAAGGGATTAACTCGTCCAGTTCCAATTCTGTTCACTGCACTGATGAGGAAAGGATAACTGATACTGACTGCGACCAATTTCTCTCGTTGCTGGAGAAACTATCTTCAGATTCTTCAGCTCTCTCTGAACAGAAAGCATCTGCGAAGGAGATCCGGCTGCTGACAAAGAAAATGCCATCTTTCAGGGTAATTTTTAGTGAATTTGAGGATGCAATTCCTCAATTGCTTAAACCACTCTCAAAAAATGGCTCTTTTAGTGACACTCACCATGATCTGCAAGAAGATGTGATCACAACACTGCTTAACATCTCAATCCATGACAACAACAAGAAGCTAGTTGCTGAGACTGAAATGGTGATTCCAATTCTTATGAAGGCCTTGGGAACAGGAACAATTGCAACCAGAAGCAATTCAGCAGCAGCACTTTTCACCTTATCAGCTCTTAACTCAAACAAAGAGCTTATAGGCAAATCAGGTGCCTTGAAGCCACTGATTGACCTCTTAGAAGAAGGGCATGCTTTGGCAATGAAAGATGTTGCTTCAGCAATTTTCTCCCTTTGTGTTCTCCATGAGAACAAGGCAAGAGCTGTGAGAGATGGTGCAGTGAGGGTGATTCTAGAAAAGATCAAGAACCGGGTTTATGTCGATGAACTGCTCGCAATTCTGGCATTGCTTTCTACTCATCAGAAGGCTGTTCAGGAAATGGGAGAGATTGGAGTAGTTCCTTGCTTGCTAAGCATTATCAGAGAAAGCAGCTGTGAACGCAACAAGGAGAATTGCATAGCAATTCTGCAGACTGTCTGTTTGTATGACAGAACAAAGTTGAAGGAAATAAAGGAAGAAGAAAGCAGTTACAGAACAATATCTCAGCTTGCTCAGAGTGGAACTTCAAGGGCTAAAAGGAAAGCCAGTGCTGTGATTGAGAGATTAAACAGGGCTGTTAATATCACACACACTGCATAA	1488	0.4315	MAKPGVGYSDPPSAAAKMIELKKELQRLVKSIVDDEDCSTETIDQAKETLSLLKDLKLRKRSSSMSLELHKTVPCPEEFKCPLSKELMRDPVIVASGKTYDRSFIQQWLKAGNRTCPQTRQVLSHTLLTPNHLVCKIIQQWCKNQGINSSSSNSVHCTDEERITDTDCDQFLSLLEKLSSDSSALSEQKASAKEIRLLTKKMPSFRVIFSEFEDAIPQLLKPLSKNGSFSDTHHDLQEDVITTLLNISIHDNNKKLVAETEMVIPILMKALGTGTIATRSNSAAALFTLSALNSNKELIGKSGALKPLIDLLEEGHALAMKDVASAIFSLCVLHENKARAVRDGAVRVILEKIKNRVYVDELLAILALLSTHQKAVQEMGEIGVVPCLLSIIRESSCERNKENCIAILQTVCLYDRTKLKEIKEEESSYRTISQLAQSGTSRAKRKASAVIERLNRAVNITHTA	464

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach6g01272	464	PANTHER	U BOX DOMAIN-CONTAINING	16	454	-	-
	Bach6g01272	464	SUPERFAMILY	ARM repeat	166	454	IPR016024	-
	Bach6g01272	464	ProSiteProfiles	U-box domain profile.	74	148	IPR003613	GO:0004842\|GO:0016567
	Bach6g01272	464	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	73	148	IPR013083	-
	Bach6g01272	464	FunFam	RING-type E3 ubiquitin transferase	74	148	-	-
	Bach6g01272	464	FunFam	RING-type E3 ubiquitin transferase	161	460	-	-
	Bach6g01272	464	CDD	RING-Ubox_PUB	76	128	IPR045210	-
	Bach6g01272	464	SUPERFAMILY	RING/U-box	73	146	-	-
	Bach6g01272	464	Gene3D	-	151	459	IPR011989	-
	Bach6g01272	464	SMART	Ubox_2	78	141	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach6g01272	Bach-Chr6	12113673	12116201	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach6g01272	137	464	U-box Gene Family	AT3G07360	60.303	2.89e-129	375

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach6g01272	-		-	gmx:100777031	630.943

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